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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctctttctaaactttctctctctagactttatcccttataatgtatatatcgattaattgattgtgatattcgatggttgaatgatgatgttgttttcgtgatatatgtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATACTCGGATGTCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATC

Basic information

species Vitis vinifera
transcript Vv15s0048g00900.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G39420.4 (Glycine max), 3'ss of exon 1
gtactctctttctaaactttctctctctagactttatcccttataatgtatatatcgattaattgattgtgatattcgatggttgaatgatgatgttgttttcgtgatatatgtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATACTCGGATGTCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATC
                 || | || |||   || |||| || | |  |||| |||   | ||||  ||     ||||  | ||| | |  |  | || ||||| |  | |     |||| ||||| |||||||| ||||| || || ||||||||||| ||||| || |||||  | ||||| ||||| ||||| |||||||||||||||||||| ||||||
----------------gttaccctttctct-ctctatctctaaaagagtatgtattattcaatttttt----cattcattcgtttatttgtttt-ttattttcttcgttt-----tttgtagATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATACGAGAATGTCCACCGGTTACAACATCCTCACTCGCGATTACTCCAAAATC

upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G39420.1 (Glycine max), 3'ss of exon 1
gtactctctttctaaactttctctctctagactttatcccttataatgtatatatcgattaattgattgtgatattcgatggttgaatgatgatgttgttttcgtgatatatgtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATACTCGGATGTCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATC
            |||  || | || |||   || |||| || | |  |||| |||   | ||||  ||     ||||  | ||| | |  |  | || ||||| |  | |     |||| ||||| |||||||| ||||| || || ||||||||||| ||||| || |||||  | ||||| ||||| ||||| |||||||||||||||||||| ||||||
-----------gtaaggttaccctttctct-ctctatctctaaaagagtatgtattattcaatttttt----cattcattcgtttatttgtttt-ttattttcttcgttt-----tttgtagATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATACGAGAATGTCCACCGGTTACAACATCCTCACTCGCGATTACTCCAAAATC

upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G60820.3 (Arabidopsis thaliana), 3'ss of exon 1
gtactctctttctaaacttt---ctctctctagactttatcccttataatgtatatatcgattaattgattgtgatattcga-tggttgaatgatgatgttgttttcgtga---ta-----tatgtatttg-cagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATACTCGGATGTCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATC
||||      | | | ||||   |   ||   |  ||| | |  | || ||| | | |   ||| |    | || |||  |   | |||  | | |||    ||   ||||   ||     | ||| |||  |||| | ||||| || || || ||  | |||||||| || ||||| ||||||||||||||||| || || |||| ||| || | |||||||||||| ||||||
gtacggatcgtgtgacctttaatcaacctgctgggtttcttcgct-tagtgtctttcttctttattctgatttgctatctgggcgattgtgttacgattcacttactgtgaatttaatcgttgtgtgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATACTCGGATGTCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33408415|gb|CF214042.1|CF214042
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110701338|gb|EE078798.1|EE078798
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110686517|gb|EE064245.1|EE064245
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110731955|gb|EE106817.1|EE106817
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|351056417|gb|FQ454278.1|FQ454278
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTATGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|351040709|gb|FQ438253.1|FQ438253
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|161712237|gb|FC061611.1|FC061611
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|351016321|gb|FQ446181.1|FQ446181
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110708375|gb|EE085848.1|EE085848
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|22011829|gb|BQ796863.1|BQ796863
EST:     AC-ATGACGAAGCAGCAAGCTAACT-GTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110690363|gb|EE067399.1|EE067399
EST:     ACAATGACGAAGCAACAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110722612|gb|EE098996.1|EE098996
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110688266|gb|EE066618.1|EE066618
EST:     ACAATGACGAAGCAACAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110687257|gb|EE064508.1|EE064508
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110705826|gb|EE083120.1|EE083120
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|161705647|gb|FC056192.1|FC056192
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110695795|gb|EE074220.1|EE074220
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|22011827|gb|BQ796861.1|BQ796861
EST:     AC-ATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATC-TGTGTTGCAATTGCA-GTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|28965578|gb|CB344611.1|CB344611
EST:     ACAATGACGAAGCAGCAAGCTAACTGGACTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110701052|gb|EE078242.1|EE078242
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110707254|gb|EE083492.1|EE083492
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110689903|gb|EE066533.1|EE066533
EST:     ACAATGACGAAGCAACAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110686704|gb|EE064648.1|EE064648
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|30135723|gb|CB921061.1|CB921061
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110690981|gb|EE068563.1|EE068563
EST:     ACAATGACGAAGCAACAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|351031033|gb|FQ444860.1|FQ444860
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTATGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110701108|gb|EE078347.1|EE078347
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|34415837|gb|CF414591.1|CF414591
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110688122|gb|EE066314.1|EE066314
EST:     ACAATGACGAAGCAACAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|351018518|gb|FQ424625.1|FQ424625
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
EST: gi|110722795|gb|EE099369.1|EE099369
EST:     ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGG                         ATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC
genomic: ACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctt ... gtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgatattcgatggttgaatgatgatgttgttttcgtgatatatgtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATACTCGGATGTCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATC
                                     tgatatatgtattt  TA-rich tract