Sequence
atgc intronic sequence ATGC exonic sequence...attaatttgcaatttgtgctccttttacataggagtgccattgtgaatcccaaataagaaaattttccaattcttgttaacatattgtactttaatgcagGACATTGCCGGTGATGGCTGCTTCAGCCTTGGTATGGTGGCTCATTTTGAGGGTACCTTGCAGAACAAGAGTGCATGGATGTATCCACGCTTATTTTGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g00430.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G03280.1 (Glycine max), 3'ss of exon 2
attaatttgcaatttgtgctccttttacataggagtgccattgtgaatcccaaataa-gaaaattttcca-attcttgttaacata--ttgtactttaatgcagGACATTGCCGGTGATGGCTGCTTCAGCCTTGGTATGGTGGCTCATTTTGAGGGTACCTTGCAGAACAAGAGTGCATGGATGTATCCACGCTTATTTTGGG
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ttctcattgctaataatatcattcttatttctgactagaatctgaactgatactcaatgaatattgtatataacctttctaatgtaactcgtactt----gcagGACATTGCAAGTGATGGTTGCTTCAGCCTTGGTATGTTGGCCCGTATGGAACCTACTTTGCGCGAGAAGAATGTCTGGATGTATCCACGTTTATTTTGGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatcccaaataagaaaattttccaattcttgttaacatattgtactttaatgcagGACATTGCCGGTGATGGCTGCTTCAGCCTTGGTATGGTGGCTCATTTTGAGGGTACCTTGCAGAACAAGAGTGCATGGATGTATCCACGCTTATTTTGGG
aaataagaaaattttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attaatttgcaatttgtgctccttttacataggagtgccattgtgaatcccaaataagaaaattttccaattcttgttaacatattgtactttaatgcagGACATTGCCGGTGATGGCTGCTTCAGCCTTGGTATGGTGGCTCATTTTGAGGGTACCTTGCAGAACAAGAGTGCATGGATGTATCCACGCTTATTTTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - tgctcct
- - - - - - - - - - - - - - - - - -tgccatt
- - - - - - - - - - - - - - - - - - - - - - - - cccaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa