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...tgtaaagggttgaagtcgaatttttgttgttcataagtgatgaatgacaagataatttggaacttaatttgcatttacaattttaattttttgagagcagGATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTCCTCCCTCCTCGTGTTATCTCATTTGAGCATCAGTATGCTCGATTCA
species | Vitis vinifera |
transcript | Vv15s0046g03670.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAG GATACTGGCTTCCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTCEST: gi|110685703|gb|EE062665.1|EE062665
genomic: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAGgttatatttc ... ttgagagcagGATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTC
EST: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAG GATACTGGCTTCCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTCEST: gi|110711784|gb|EE088657.1|EE088657
genomic: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAGgttatatttc ... ttgagagcagGATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTC
EST: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAG GATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTCEST: gi|110710958|gb|EE087607.1|EE087607
genomic: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAGgttatatttc ... ttgagagcagGATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTC
EST: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAG GATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTCEST: gi|110711356|gb|EE087746.1|EE087746
genomic: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAGgttatatttc ... ttgagagcagGATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTC
EST: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAG GATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTCEST: gi|110699671|gb|EE076873.1|EE076873
genomic: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAGgttatatttc ... ttgagagcagGATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTC
EST: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAG GATACTGGCTTCCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTCEST: gi|110719431|gb|EE094555.1|EE094555
genomic: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAGgttatatttc ... ttgagagcagGATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTC
EST: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAG GATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTCEST: gi|110712870|gb|EE088292.1|EE088292
genomic: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAGgttatatttc ... ttgagagcagGATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTC
EST: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAG GATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTC
genomic: TTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAGgttatatttc ... ttgagagcagGATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTC
gacaagataatttggaacttaatttgcatttacaattttaattttttgagagcagGATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTCCTCCCTCCTCGTGTTATCTCATTTGAGCATCAGTATGCTCGATTCA
ttttaat putative branch site (score: 3)
tttttt CT-rich tract
aacttaatttgcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaaagggttgaagtcgaatttttgttgttcataagtgatgaatgacaagataatttggaacttaatttgcatttacaattttaattttttgagagcagGATACTGGCTTTCCTTTGACAGAGAGAGATCGACTTGGGCTGCGAGGTCTCCTCCCTCCTCGTGTTATCTCATTTGAGCATCAGTATGCTCGATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - gggttga
- - - - - - - - - - - - - - - - - - - - - - - - aagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catttac