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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtggttgttgcctgtaactttctgctgttgtttttgagctgaatttctgtctatattgaataaacactgagaagttcttcatttggttcattatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG

Basic information

species Vitis vinifera
transcript Vv15s0046g03520.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351037054|gb|FQ465046.1|FQ465046
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|30255051|gb|CB971498.1|CB971498
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|110701264|gb|EE078642.1|EE078642
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGTAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|351014077|gb|FQ434229.1|FQ434229
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|351029490|gb|FQ436884.1|FQ436884
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|110722626|gb|EE099031.1|EE099031
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|110689404|gb|EE065600.1|EE065600
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|294966590|gb|GW837725.1|GW837725
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|351052425|gb|FQ452458.1|FQ452458
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|110369745|gb|EC933913.1|EC933913
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTCCGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|30323265|gb|CD006527.1|CD006527
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|30296186|gb|CB972980.1|CB972980
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTCCGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|110374344|gb|EC939025.1|EC939025
EST:     TGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: TGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|349826399|gb|FQ417896.1|FQ417896
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|349822047|gb|FQ408376.1|FQ408376
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCGCAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|30253357|gb|CB970908.1|CB970908
EST:     TGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: TGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|351056098|gb|FQ453560.1|FQ453560
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCCAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|349808339|gb|FQ405483.1|FQ405483
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|30254481|gb|CB971226.1|CB971226
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|156736254|gb|EV240375.1|EV240375
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|110388071|gb|EC952787.1|EC952787
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|161711444|gb|FC061209.1|FC061209
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTCCGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|349824204|gb|FQ417591.1|FQ417591
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|37189632|gb|CF608981.1|CF608981
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCAAGAAAG                         GTGGCTACTCCACAGATGTTAAAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|351019470|gb|FQ429605.1|FQ429605
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|27579428|gb|CB002123.1|CB002123
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|27580564|gb|CB003259.1|CB003259
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|351053383|gb|FQ455719.1|FQ455719
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|77584263|gb|DV221204.1|DV221204
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|110708707|gb|EE086556.1|EE086556
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|351019263|gb|FQ429423.1|FQ429423
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|71867285|gb|DT016340.1|DT016340
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|349833445|gb|FQ420191.1|FQ420191
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|161717186|gb|FC064703.1|FC064703
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|33406828|gb|CF212455.1|CF212455
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTCCGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|27579427|gb|CB002122.1|CB002122
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|110400084|gb|EC966626.1|EC966626
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTCCGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|33410547|gb|CF216174.1|CF216174
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTCCGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
EST: gi|110707835|gb|EE084684.1|EE084684
EST:     GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAG                         GTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
genomic: GCTTAATTGCATTGTTCGATGTTGATGGGACTCTCACAGCGCCGAGAAAGgtctgaatct ... attatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgtctatattgaataaacactgagaagttcttcatttggttcattatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG
     tctatattgaataaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtggttgttgcctgtaactttctgctgttgtttttgagctgaatttctgtctatattgaataaacactgagaagttcttcatttggttcattatacaagGTGGCTACTCCACAGATGTTAGAGTTCATGCGGAAACTACGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
-gtggttg
- - - - -tgcctgt
- - - - - - - - - - -tctgctg
- - - - - - - - - - - - - - - - - - - - - - -ttctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa