Sequence
atgc intronic sequence ATGC exonic sequencegtccacttatattagttccaattttgggctaaaggccaacatttagtgcactttctcatatctctttccttttctctcagATGAATGAGGAAGAAGCTTCCCTTTTTGACATGTTATGGTTACTGCTAGCAAGTGTTATATTTGTGCCTATATTCCAGAAAATTCCTGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G46420.1 (Glycine max), 3'ss of exon 10
----gtccacttatattagttccaattttgggctaaaggccaacatttagtgcactttctcatatctctttccttttctctcagATGAATGAGGAAGAAGCTTCCCTTTTTGACATGTTATGGTTACTGCTAGCAAGTGTTATATTTGTGCCTATATTCCAGAAAATTCCTGGAG
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gtttgtttttctttattctttccc-ctttagtcttgtgctcaatgttgtaaattttatctgactttgtaagacatgtatcccagGTGAACGAGGAAGAAGCCTCCCTTTTTGACATGCTCTGGTTATTACTTGCCAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAG
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G39770.1 (Glycine max), 3'ss of exon 6
gtccacttatattagttc---caattttgggctaaaggccaacatttagtgcactttctcatatctctttccttttctctcagATGAATGAGGAAGAAGCTTCCCTTTTTGACATGTTATGGTTACTGCTAGCAAGTGTTATATTTGTGCCTATATTCCAGAAAATTCCTGGAG
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gtttgtttttcttcattctttcccctttagtcttgtgctcaattttgtaaattttaactgactttgtaagacatctatcccagGTGAACGAGGAAGAAGCCTCCCTCTTTGACATCCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAG
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 3'ss of exon 3
--------gtccacttatattagttccaattttgggctaaaggccaac---atttagtgcactttctca--tatctctttccttttctctcagATGAATGAGGAAGAAGCTTCCCTTTTTGACATGTTATGGTTACTGCTAGCAAGTGTTATATTTGTGCCTATATTCCAGAAAATTCCTGGAG
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gtatgaacaattgttcttgtttttttttttcttttacgaagtgcaaattgtatggaatgtactttgcaggctgaaactttctgcaattaatagGTCAATGAGGAAGAAGCTTCCCTCTTTGACTTTTTGTGGTTACTGCTAGCAAGCGTCATATTTGTGCCTCTATTTCAGAAAATTCCTGGAG
upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G00630.2 (Arabidopsis thaliana), 3'ss of exon 2
------gtccacttatattagttccaattttgggctaaaggccaacat---ttagtgcactttctcatatctctttcctttt-----ctctcagATGAATGAGGAAGAAGCTTCCCTTTTTGACATGTTATGGTTACTGCTAGCAAGTGTTATATTTGTGCCTATATTCCAGAAAATTCCTGGAG
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gtatgagtggtcatgcaggaaatgtactctttcacgagtcccatacataccttatggaatttaactgtctgcctccaacttttataacacttagGTTAATGAGGAGGAAGCTTCCCTTCTCGATGTGTTGTGGTTACTGCTTGCAAGCGTCATATTCGTGCCTCTATTTCAGAAAATTCCTGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gggctaaaggccaacatttagtgcactttctcatatctctttccttttctctcagATGAATGAGGAAGAAGCTTCCCTTTTTGACATGTTATGGTTACTGCTAGCAAGTGTTATATTTGTGCCTATATTCCAGAAAATTCCTGGAG
ggctaaa putative branch site (score: 3)
tgcactttctcatatc putative PPT
aacattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtccacttatattagttccaattttgggctaaaggccaacatttagtgcactttctcatatctctttccttttctctcagATGAATGAGGAAGAAGCTTCCCTTTTTGACATGTTATGGTTACTGCTAGCAAGTGTTATATTTGTGCCTATATTCCAGAAAATTCCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG