Sequence
atgc intronic sequence ATGC exonic sequence...gcatgatttgaattgtgaacctaaatcttaattaggaaaagtgattgttgggtgatttaccaatgctctattttacgtagcttatgttttatcctggtagGCGAATTCGGCATCTGGGATGGCAGTGCATGATGAGTGCAAGCTCAAGTTCTTGGAACTAAAAGCAAAGAGAAATCATCGGTTCATTGTCTTCAAGATCG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110372174|gb|EC936323.1|EC936323EST: TTTTGGGTCATTTTACAGAAGGGTCATCTCTCGGTGGAGG--ACAACATG GCGAATTCGGCATCTGGGATGGCAGTGCATGATGAGTGCAAGCTCAAGTTC
genomic: TTTTGGATCATTTTACAGAAGGGTCATCTCTCAGTGGAGGACACAACATGgtatgctctc ... atcctggtagGCGAATTCGGCATCTGGGATGGCAGTGCATGATGAGTGCAAGCTCAAGTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttgggtgatttaccaatgctctattttacgtagcttatgttttatcctggtagGCGAATTCGGCATCTGGGATGGCAGTGCATGATGAGTGCAAGCTCAAGTTCTTGGAACTAAAAGCAAAGAGAAATCATCGGTTCATTGTCTTCAAGATCG
ttttatcct CT-rich tract
ttatgttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcatgatttgaattgtgaacctaaatcttaattaggaaaagtgattgttgggtgatttaccaatgctctattttacgtagcttatgttttatcctggtagGCGAATTCGGCATCTGGGATGGCAGTGCATGATGAGTGCAAGCTCAAGTTCTTGGAACTAAAAGCAAAGAGAAATCATCGGTTCATTGTCTTCAAGATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
gcatgat
- - - - - - - - -aacctaa
- - - - - - - - - - - - - - - - - ggaaaag
- - - - - - - - - - - - - - - - - - - - - - - -ttgggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - accaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttatg