1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aggcatgaatatgttgagccatttcttgttttattaaccctttgttttattccacaaggagaatctgtaattgtactcataatccgctttgatttcatagGTAAAAGTACCAACTTGGGTTGATCATGAAGAAGGGAATGAATATGTTGGTGTTGGTGCTCGATTCGGTCCTACCTTGGAATCAAAAGAGAAACATGCTA
species | Vitis vinifera |
transcript | Vv15s0046g02460.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGATGACATCGCTCCGAAGAAGCCTGGCTGCGAGAACAACTTCGTTCTG GTAAAAGTACCAACTTGGGTTGATCATGAAGAAGGGAATGAATATGTTGGTEST: gi|294965942|gb|GW839281.1|GW839281
genomic: AGGATGACATCGCTCCGAAGAAGCCTGGCTGCGAGAACAACTTCGTTCTGgtaagacgtc ... gatttcatagGTAAAAGTACCAACTTGGGTTGATCATGAAGAAGGGAATGAATATGTTGGT
EST: AGGATGACATCGCTCCGAAGAAGCCTGGCTGCGAGAACAACTTCGTTCTG GTAAAAGTACCAACTTGGGTTGATCATGAAGAAGGGAATGAATATGTTGGTEST: gi|110712809|gb|EE088181.1|EE088181
genomic: AGGATGACATCGCTCCGAAGAAGCCTGGCTGCGAGAACAACTTCGTTCTGgtaagacgtc ... gatttcatagGTAAAAGTACCAACTTGGGTTGATCATGAAGAAGGGAATGAATATGTTGGT
EST: AGGATGACATCGCTCCGAAGAAGCCTGGCTGCGAGAACAACTTCGTTCTG GTAAAAGTACCAACTTGGGTTGATCATGAAGAAGGGAATGAATATGTTGGTEST: gi|37188361|gb|CF607710.1|CF607710
genomic: AGGATGACATCGCTCCGAAGAAGCCTGGCTGCGAGAACAACTTCGTTCTGgtaagacgtc ... gatttcatagGTAAAAGTACCAACTTGGGTTGATCATGAAGAAGGGAATGAATATGTTGGT
EST: AGGATGACATCGCTCCGAAGAAGCCTGGCTGCGAGAACAACTTCGTTCTG GTAAAAGTACCAACTTGGGTTGATCATGAAGAAGGGAATGAATATGTTGGTEST: gi|161714434|gb|FC064433.1|FC064433
genomic: AGGATGACATCGCTCCGAAGAAGCCTGGCTGCGAGAACAACTTCGTTCTGgtaagacgtc ... gatttcatagGTAAAAGTACCAACTTGGGTTGATCATGAAGAAGGGAATGAATATGTTGGT
EST: AGGATGACATCGCTCCGAAGAAGCCTGGCTGCGAGAACAACTTCGTTCTG GTAAAAGTACCAACTTGGGTTGATCATGAAGAAGGGAATGAATATGTTGGT
genomic: AGGATGACATCGCTCCGAAGAAGCCTGGCTGCGAGAACAACTTCGTTCTGgtaagacgtc ... gatttcatagGTAAAAGTACCAACTTGGGTTGATCATGAAGAAGGGAATGAATATGTTGGT
tttattccacaaggagaatctgtaattgtactcataatccgctttgatttcatagGTAAAAGTACCAACTTGGGTTGATCATGAAGAAGGGAATGAATATGTTGGTGTTGGTGCTCGATTCGGTCCTACCTTGGAATCAAAAGAGAAACATGCTA
ctttgat putative branch site (score: 5)
taattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggcatgaatatgttgagccatttcttgttttattaaccctttgttttattccacaaggagaatctgtaattgtactcataatccgctttgatttcatagGTAAAAGTACCAACTTGGGTTGATCATGAAGAAGGGAATGAATATGTTGGTGTTGGTGCTCGATTCGGTCCTACCTTGGAATCAAAAGAGAAACATGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- gcatgaa
- - - - - - - - - ccatttc
- - - - - - - - - - - - - - - - - - -ccctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aggagaa