Sequence
atgc intronic sequence ATGC exonic sequence...ttggtttgatataaagataaatttccctatttaatttttgtggtcttttaagagtgattgatgattctgaagctacaatggcactgctatacattctcagATGATGAAGTCCTACATTTGGCTCCAGACTGCTGATGGTTCAATCCAAGAAGTAGAACAAGAAGTGGCCATGTTTTGCCCCTTGATATGTGATGAAATAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02450.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G01090.2 (Glycine max), 3'ss of exon 1
ttggtttgatataaagataaatttccctatttaatttttgtggtcttttaagagtga-ttgatgattctgaagctacaatggcactgc-tatacattctcagATGATGAAGTCCTACATTTGGCTCCAGACTGCTGATGGTTCAATCCAAGAAGTAGAACAAGAAGTGGCCATGTTTTGCCCCTTGATATGTGATGAAATAA
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aaaaattaatgcaatga--aacttccctacaagagaatcaagaccttccattggttactttcttacattgaaactgaaactcttctttgtttgtattttcagATGATGAAGCTGTATGTCTGGCTTCAGACTTCAGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCACTGATATGTCAAGAAATAA
upper sequence: Vv15s0046g02450.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G07600.1 (Glycine max), 3'ss of exon 2
ttggtttgatataaagataaatttccctatttaatttttgtggtcttttaagagtga-ttgatgattctgaagctacaatggcactgc-tatacattctcagATGATGAAGTCCTACATTTGGCTCCAGACTGCTGATGGTTCAATCCAAGAAGTAGAACAAGAAGTGGCCATGTTTTGCCCCTTGATATGTGATGAAATAA
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aaaaattaatgctagga--aacttccctaccagagaatcaagaccttgcattggttactttcttacgttgaaactgaaactattctttgtttgtattttcagATGATGAAGCCGTATGTATGGCTTCAGACTTCAGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTCCCCACTGATATGTCAAGAAATAA
upper sequence: Vv15s0046g02450.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G45950.1 (Arabidopsis thaliana), 3'ss of exon 2
----ttggtttgatataaagataaatttccctatttaatttttgtggtcttttaagagtgattgatgattctgaagctacaatggcactgctatacattctcagATGATGAAGTCCTACATTTGGCTCCAGACTGCTGATGGTTCAATCCAAGAAGTAGAACAAGAAGTGGCCATGTTTTGCCCCTTGATATGTGATGAAATAA
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ttctcatcttcgcaattcacgtgagctagtta--ttaatttttctactgatgtatgattttatatgaaagactaaatttctctcgcggtgtcatggatat--agACCATGAAGTCCTACATCTGGCTTCAAACTGCTGATGGTTCAATCCAGCAAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATTTGTCAAGAGGTAA
upper sequence: Vv15s0046g02450.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G61415.2 (Arabidopsis thaliana), 3'ss of exon 2
ttggtttgatataaagataaatttccctatttaatttttgtggtcttttaagagtgattga-tgattctgaagcta--caatggcactgctatacattctcagATGATGAAGTCCTACATTTGGCTCCAGACTGCTGATGGTTCAATCCAAGAAGTAGAACAAGAAGTGGCCATGTTTTGCCCCTTGATATGTGATGAAATAA
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---attttaagtgttatcttctttatgtatggagtttttgaatgattagttgagcttttaccttgcaccaagactaattactttttttgtggtatcaacatagATGATGAAATCCTATATATGGCTTGAAACTGCTGATGGCTCAATCCAACAAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATATGTCAAGAAGTAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttaagagtgattgatgattctgaagctacaatggcactgctatacattctcagATGATGAAGTCCTACATTTGGCTCCAGACTGCTGATGGTTCAATCCAAGAAGTAGAACAAGAAGTGGCCATGTTTTGCCCCTTGATATGTGATGAAATAA
gattgat putative branch site (score: 4)
cattctc putative PPT
tatacatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttggtttgatataaagataaatttccctatttaatttttgtggtcttttaagagtgattgatgattctgaagctacaatggcactgctatacattctcagATGATGAAGTCCTACATTTGGCTCCAGACTGCTGATGGTTCAATCCAAGAAGTAGAACAAGAAGTGGCCATGTTTTGCCCCTTGATATGTGATGAAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
-tggtttg
- - - - - ataaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcactgc