Sequence
atgc intronic sequence ATGC exonic sequence...gaactaaaatttgaggttctttagagctctgttatgaaatggctttcatacggtaggaaaatcatgcattctgatatatatatgttttttttatccatagTTTTGATCGAGATTGGAAGAAGATCGAAGCATTTGTTGGGTCCAAAACAGTTATCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G03640.1 (Glycine max), 3'ss of exon 1
--gaactaaaatttgaggttctttagagctctgttatgaaatggctttcatacggtaggaaaatcatgcattctgatatatatatgttttttttatccat---agTTTTGATCGAGATTGGAAGAAGATCGAAGCATTTGTTGGGTCCAAAACAGTTATCCAG
||| | || || | || | | || | | || ||| | | | | ||||| | | ||| || | || || |||||||| || ||||| ||||| |||||||||||||| || |||||||||||||||
caaaaccagtatatgtaa--caataatgattaatttatgatttatttgtatattttt---acttttttttttctgtgtttctcacttttgcttgactaattccagATTTGATCGGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAG
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G07200.1 (Glycine max), 3'ss of exon 1
gaactaaaatttgaggttctttagagctctgttatgaaatggctttcatacggtaggaaaatcatgcattctgatatatatatgttttttttatccat---agTTTTGATCGAGATTGGAAGAAGATCGAAGCATTTGTTGGGTCCAAAACAGTTATCCAG
||| | | | | || | ||| || | || | | | || || | | || || | || || |||||||| || ||||| ||||| |||||||||||||| || |||||||||||||||
--ttccaaaaccagtatatgtaacaatattgatggtttatgatttgtttgtt-tacttttacctttttttttgtgtttctcactttcgcttgactaatttcagATTTGATCGGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAG
upper sequence: Vv15s0046g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G47230.1 (Glycine max), 3'ss of exon 1
---gaactaaaatttgaggttctttagagctctgttatgaaatggctttcatacggtaggaaaatcatgcattctgatatatatatgtttttt--ttatccatagTTTTGATCGAGATTGGAAGAAGATCGAAGCATTTGTTGGGTCCAAAACAGTTATCCAG
| || | | || ||| | | | | | | | | | | || | || | ||| || | | | | | | | | | || || || || || ||||||||||| ||||||||||| || || |||||||||||||||
ttcctttttcaactggggggtctaaaaatcgtttctttt---ttgttgttgtatgttattgc--ttatggttttcactttgtgtttctctcctgactgatttcagATTCGACCGTGACTGGAAGAAGATTGAAGCATTTGTAGGTTCAAAAACAGTTATCCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690730|gb|EC957082.1|EC957082EST: GAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACT TTTTGATCGAGATTGGAAGAAGATCGAAGCATTTGTTGGGTCCAAAACAGT
genomic: GAGAGCTGGACCGAGCAAGAGCACGATAAGTTTCTCGAAGCTTTACAACTgtacgtcgct ... ttatccatagTTTTGATCGAGATTGGAAGAAGATCGAAGCATTTGTTGGGTCCAAAACAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatacggtaggaaaatcatgcattctgatatatatatgttttttttatccatagTTTTGATCGAGATTGGAAGAAGATCGAAGCATTTGTTGGGTCCAAAACAGTTATCCAG
ttctgat putative branch site (score: 3)
tgttttttttatcc putative PPT
attctgatatatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaactaaaatttgaggttctttagagctctgttatgaaatggctttcatacggtaggaaaatcatgcattctgatatatatatgttttttttatccatagTTTTGATCGAGATTGGAAGAAGATCGAAGCATTTGTTGGGTCCAAAACAGTTATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
-aactaaa
- - - - - - - - - - - - - - - - - - -aatggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcat