Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcttcctggtgctcctttttgtttattttcagcaacattttcataagcacttagtagcttcctttccttttacaattttgcattgctgaatgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCACAGAATGCAAAGGGTTTAGAAGCAGCCATGAACGAGCTGGCTCTTATTG

Basic information

species Vitis vinifera
transcript Vv15s0046g01780.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g01780.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G47200.1 (Glycine max), 3'ss of exon 1
ttcttcctggtgctcctttttgtttattttcagcaacattttcataagcacttagtagcttcctttccttttacaattttgcatt---gctgaatgtggat-agGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCACAGAATGCAAAGGGTTTAGAAGCAGCCATGAACGAGCTGGCTCTTATTG
    |  || ||     |  |||| |     || ||       || | || || ||     | |    |||| |||| |||  ||    ||   |     | |||| || || || || ||||||||  ||||||||||||||||||||||| | || |||||||||||||| || || || || |  || || || || ||  
-aagttttgatgtcaaatagtgttgaaga--agaaatgggggtatgatcatttggtt-tgccttcaatttttgcaatgttgggttttatcttccttcatttcagGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATTGGAGATGCTGCGCAAAATGCAAAGGGTTTGGACGCGGCAATAAGTGATCTAGCACTGATCA

upper sequence: Vv15s0046g01780.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G39130.1 (Glycine max), 3'ss of exon 2
ttcttcctggtgctcctttttgtttattttcagcaacattttcataagcacttagtagcttcctttccttttacaattttgcattg---ctgaatgtggat---agGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCACAGAATGCAAAGGGTTTAGAAGCAGCCATGAACGAGCTGGCTCTTATTG
    |  |||||     |  |||| |     || ||      ||| | || || ||     | |    |||| |||| |||  ||    ||     |  ||   |||| || || || || ||||||||  ||||||||||||| ||||||||| |||| |||||||||||||| || || || || |  || || || || ||  
---gttttggtgtcaaatagtgttgaaga--agaaatgggggcatgatcatttggtt-tgccttcaatttttgcaatgttgggttttatcttttccttcatttcagGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATCGGAGATGCTGCACAAAATGCAAAGGGTTTGGACGCGGCAATAAGTGATCTAGCACTGATCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035455|gb|FQ463300.1|FQ463300
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|22013151|gb|BQ798200.1|BQ798200
EST:     AGATAGTTCCATTGCTCAAGNAGGAGTTNTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTNTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351045317|gb|FQ451765.1|FQ451765
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATCGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351030578|gb|FQ437004.1|FQ437004
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351030538|gb|FQ436964.1|FQ436964
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351042130|gb|FQ456340.1|FQ456340
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|349828263|gb|FQ416216.1|FQ416216
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351017882|gb|FQ436235.1|FQ436235
EST:     AGATAGTTCCATTGCTCAAGGAGGGGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|161720953|gb|FC070681.1|FC070681
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|71865643|gb|DT014698.1|DT014698
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351016072|gb|FQ432027.1|FQ432027
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|56408806|gb|CX017058.1|CX017058
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351026964|gb|FQ436617.1|FQ436617
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|56408178|gb|CX016430.1|CX016430
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351022203|gb|FQ438788.1|FQ438788
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|71867291|gb|DT016346.1|DT016346
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|110687486|gb|EE064950.1|EE064950
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|110375776|gb|EC940793.1|EC940793
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351033620|gb|FQ447779.1|FQ447779
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|349832551|gb|FQ421909.1|FQ421909
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|349815975|gb|FQ403616.1|FQ403616
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTTTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351030698|gb|FQ438536.1|FQ438536
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|349825710|gb|FQ421809.1|FQ421809
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351033384|gb|FQ446616.1|FQ446616
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351045028|gb|FQ449282.1|FQ449282
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCGTGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351049074|gb|FQ431618.1|FQ431618
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351023686|gb|FQ448237.1|FQ448237
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351030286|gb|FQ432224.1|FQ432224
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|71867016|gb|DT016071.1|DT016071
EST:     CAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: CAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|71868053|gb|DT017108.1|DT017108
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|352790706|gb|FQ478254.1|FQ478254
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACAAGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351042360|gb|FQ442827.1|FQ442827
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATCGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|27578568|gb|CB001263.1|CB001263
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|71869282|gb|DT018337.1|DT018337
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351012870|gb|FQ430433.1|FQ430433
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|352791450|gb|FQ481029.1|FQ481029
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|110358358|gb|EC922512.1|EC922512
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|71873611|gb|DT022666.1|DT022666
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351021558|gb|FQ429662.1|FQ429662
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351045145|gb|FQ451593.1|FQ451593
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATCGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|349821808|gb|FQ408246.1|FQ408246
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351053655|gb|FQ440164.1|FQ440164
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|349812605|gb|FQ407224.1|FQ407224
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|77579195|gb|DV218426.1|DV218426
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|110389487|gb|EC954329.1|EC954329
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|349828781|gb|FQ419114.1|FQ419114
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGGTCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351056181|gb|FQ453643.1|FQ453643
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|110702811|gb|EE079108.1|EE079108
EST:     ATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: ATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|33406268|gb|CF211895.1|CF211895
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|349807946|gb|FQ402337.1|FQ402337
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|29782281|gb|CB347466.2|CB347466
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351053768|gb|FQ441534.1|FQ441534
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|110396342|gb|EC962026.1|EC962026
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|33406184|gb|CF211811.1|CF211811
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|77587759|gb|DV223071.1|DV223071
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351047630|gb|FQ455027.1|FQ455027
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|352786576|gb|FQ479783.1|FQ479783
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|349821668|gb|FQ411168.1|FQ411168
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|349821014|gb|FQ404267.1|FQ404267
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351013187|gb|FQ424892.1|FQ424892
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
EST: gi|351047074|gb|FQ454684.1|FQ454684
EST:     AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAG                         GTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA
genomic: AGATAGTTCCATTGCTCAAGGAGGAGTTCTCCTATCAGAACATGCATGAGgtcactccct ... atgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcacttagtagcttcctttccttttacaattttgcattgctgaatgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCACAGAATGCAAAGGGTTTAGAAGCAGCCATGAACGAGCTGGCTCTTATTG
                       ttttacaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttcttcctggtgctcctttttgtttattttcagcaacattttcataagcacttagtagcttcctttccttttacaattttgcattgctgaatgtggatagGTTCCAAAGATCGAAAAGATTGTTCTGAACTGTGGTATTGGAGATGCTTCACAGAATGCAAAGGGTTTAGAAGCAGCCATGAACGAGCTGGCTCTTATTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- -ttcctgg
- - - - - tgctcct
- - - - - - - - - - - - - - -tcagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattgct