Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttttttttaatatatttgagggatttgtttgttccgggtctctcatgccctaactttatcctcttcgtggggtttgttgctgtgttcatttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTGGCGGAGCCACTGCCATGTGGGTGCTTTTCGAATTGCTTGAATACCATCT

Basic information

species Vitis vinifera
transcript Vv15s0046g01760.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g01760.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os01g12650.1 (Oryza sativa), 3'ss of exon 1
ttttttttttaatatatttgagggatttgtttgttccgggtctctcatgccctaactttatcctcttcgtggggtt-tgttgctgt--gttcatttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTGGCGGAGCCACTGCCATGTGGGTGCTTTTCGAATTGCTTGAATACCATCT
    |||| |  |  |  |||    |   ||   | |   | |   ||  ||| | | |    | ||| |   |   | ||| | |  ||||  |   ||||| ||||||||| ||  | |||||||||| ||| ||||||||||| ||||| ||||| |||||||| || ||| | ||||| ||||||||||  ||||| ||
---attttgtggttgaggtgaaatttccattatgtgctcatgttatatagcctgattatccattgttcatcctgccatattgatttcagttctctatttgcagCCGCTGATGTGTTCCTATGGAGGAACAGGAACATCTCTGCCGGTGTACTAGGCGGTGCCACTGCGATCTGGATCCTTTTTGAATTGCTTGGCTACCACCT

upper sequence: Vv15s0046g01760.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G159388_T01 (Zea mays), 3'ss of exon 1
---ttttttttttaatatatttga-gggatttgtttgttccgggtctctcatgccctaactttatcctcttcgtggggtttgttgctgtgttcatttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTGGCGGAGCCACTGCCATGTGGGTGCTTTTCGAATTGCTTGAATACCATCT
   |  |    || ||  || | | | || ||||  |  |    |  || ||   ||  | || | | |    |     |  || | ||  ||  ||  || ||  |||||||| || ||||||||||||||||| |||||||| ||||||||||| || ||||| || || ||| |  | || ||||||||||  ||||||||
gattgataaacttgatcgatgtaatgagaattgtgagacctaaataccttatcgtctgtcattgtacccacaata---ctcattaccgttctctattt-tgtagCTGCTGATGTGTTCTTGTGGAGGAACAAGAACATCTCTGCTGGAGTACTTGGTGGTGCCACAGCAATCTGGATCTTATTTGAATTGCTTGGCTACCATCT

upper sequence: Vv15s0046g01760.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G359018_T03 (Zea mays), 3'ss of exon 1
----ttttttttttaatat-atttgagggatttgtttgttccgggtctctcatgccctaactttatcctcttcgtggggtttgttgctgtgttcatttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTGGCGGAGCCACTGCCATGTGGGTGCTTTTCGAATTGCTTGAATACCATCT
    |  ||  | |||| | | ||| | ||    |  |  |    |  || ||   ||  | || | |    | |     |  || || |  ||  ||  |||||  |||||||| ||  |||||||||||| ||| ||||| |||||||||||||| |||||||| || || ||| | || || ||||||||||  ||||||||
gacttgattggtgtaatgtcaattgtgagacac-tgagacctaaatacctgatcgtctgtcattttacctacctta---ctcattactcttctctattt-tgcagCTGCTGATGTGTTCCTGTGGAGGAACAGGAACATCTCCGCCGGAGTACTTGGTGGAGCCACAGCAATCTGGATCCTATTTGAATTGCTTGGCTACCATCT

upper sequence: Vv15s0046g01760.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G359018_T02 (Zea mays), 3'ss of exon 1
ttttttttttaatatatttgagggatttgtttgttccgggtctctcatgccctaactttatcctcttcgtggggtttgttgctgtgttcatttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTGGCGGAGCCACTGCCATGTGGGTGCTTTTCGAATTGCTTGAATACCATCT---------------------------------------------------------
                                                    | | |||| |  | |        |  || || |  ||  ||  |||||  |||||||| ||  |||||||||||| ||| ||||| |||||||||||||| |||||||| || || ||| | || || ||||||||||  ||||||||                                                         
---------------------------------------------------gtcattttacctaccttac-----tcattactcttctctattt-tgcagctgctgatgtgttcctgtggaggaacaggaacatctccgccggagtacttggtggagCCACAGCAATCTGGATCCTATTTGAATTGCTTGGCTACCATCTTCTTACTTTTGTTTGCCATGGTCTCATATTCTCTCTGGGTGTTCTCTTTCTCTGGTC

upper sequence: Vv15s0046g01760.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G38890.1 (Glycine max), 3'ss of exon 1
---ttttttttttaatatatttgagggatttgtttgttccgggtc-tctcatgccctaactttatcctcttcgtggggtttgttgctg-tgttcatttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTGGCGGAGCCACTGCCATGTGGGTGCTTTTCGAATTGCTTGAATACCATCT
    || | |   | | | ||||      | |   |      |   | |||  |  | |   |||| | |     || ||||||  || || ||||||  |||||  |||||||| || ||||||||||||||||| || ||||| || || |||||||||||||||||  | ||||| ||||| || |||||||| || || ||
agaattgtatgcgactgtgtttggttatatagagggagaaaagaagtttcagtctatgatactatcttat-----ggctttgtttttggtgatcattttttgcagCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATATCTGCTGGCGTGCTTGGCGGAGCCACTGCTGTTTGGGTCCTTTTTGAGTTGCTTGAGTATCACCT

upper sequence: Vv15s0046g01760.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G47420.1 (Glycine max), 3'ss of exon 1
--ttttttttttaatatatttgagggatttgtttgttccgggtctctcatgccctaactttatcctcttcgtggggtttgttgctg-tgttcatttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTGGCGGAGCCACTGCCATGTGGGTGCTTTTCGAATTGCTTGAATACCATCT
      || | |   || | |||| | |||  | |     | |   | | |    |   | ||  | |     || ||||||  || ||   || |  |||||  |||||||| || ||||||||||||||||| || ||||| ||  | |||||||||||||||||  | ||||| ||||| || |||||||| || || ||
ggagaattgtatgcgat-tgtgagtggttttatagagt--gataaatgaagttgcagtctgataatatcttatggctttgtttttgatgacaatattttgcagCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTGGCGGAGCCACTGCTGTTTGGGTTCTTTTTGAGTTGCTTGAGTATCACCT

upper sequence: Vv15s0046g01760.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G06830.1 (Glycine max), 3'ss of exon 1
ttttttttttaatatatttgagggat-ttgtttgttccgggtctctcatgccctaactttatcctcttcgtggggtttgttgctgtgttcatttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTGGCGGAGCCACTGCCATGTGGGTGCTTTTCGAATTGCTTGAATACCATCT
  ||  ||  |||     ||||  ||  | | ||||     | |    ||     |  |  || |  |  |    ||| |     |  || |  | |||||  ||||||||  | |||||||||||||||||||| ||||| || |||||||| | |||||| || || ||| |  |||| || ||||||||||| || ||
-attaattgaaattagaatgagaaatactttatgtttaatttttaatctgtaaccaactagtctttatttttatttttttaataataatcttcaattgcagCTGCTGATGTTCTCTTGTGGAGGAACAAGAAGATATCTGCTGGTGTACTTGGTGTAGCCACGGCTATTTGGATCTTTTTTGAGTTGCTTGAATATCACCT

upper sequence: Vv15s0046g01760.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G03410.2 (Glycine max), 3'ss of exon 1
ttttttttttaatatatttgagggatttgtttgttccgggtctct-catgcc-ctaactttatcctcttcgtggggtttgttgctgtgttcatttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTGGCGGAGCCACTGCCATGTGGGTGCTTTTCGAATTGCTTGAATACCATCT
|   |   |||||  |  | ||  |||  ||| ||     | |   | ||   | ||||   |  ||||  |    | | || |  |  || |  | |||||  ||||||||  | |||||||||||||||||||| |||||  | |||||||| | |||||||||  | ||| |  |||| || ||||||||||| || ||
tccctaaattaattgaaattaga-attactttattttaatttttaacctgtaaccaactaactggtctttattttttatttttcc-taatcttcaattgcagCTGCTGATGTGCTCTTGTGGAGGAACAAGAAGATATCTGCTAGTGTACTTGGTGTAGCCACTGCTGTTTGGATCTTTTTTGAGTTGCTTGAATATCACCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71884512|gb|DT033567.1|DT033567
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110364951|gb|EC928577.1|EC928577
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|30251943|gb|CB969676.1|CB969676
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|71858977|gb|DT008032.1|DT008032
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110356590|gb|EC919531.1|EC919531
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110711162|gb|EE087391.1|EE087391
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|156736226|gb|EV240347.1|EV240347
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110685758|gb|EE062756.1|EE062756
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110703673|gb|EE080726.1|EE080726
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110686740|gb|EE064724.1|EE064724
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110388764|gb|EC953547.1|EC953547
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|37188737|gb|CF608086.1|CF608086
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|30124796|gb|CB910135.1|CB910135
EST:     CAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|27579632|gb|CB002327.1|CB002327
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|77589427|gb|DV223988.1|DV223988
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|32268618|gb|CD717777.1|CD717777
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|32272041|gb|CD721200.1|CD721200
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|71858167|gb|DT007222.1|DT007222
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTAC
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTAC
EST: gi|351025251|gb|FQ434264.1|FQ434264
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|161714715|gb|FC064487.1|FC064487
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACATGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|71866436|gb|DT015491.1|DT015491
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|161718876|gb|FC065079.1|FC065079
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|71890154|gb|DT039209.1|DT039209
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110697222|gb|EE074019.1|EE074019
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|34545973|gb|CF514205.1|CF514205
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110700522|gb|EE078654.1|EE078654
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|161710118|gb|FC060257.1|FC060257
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110697771|gb|EE075141.1|EE075141
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|32270261|gb|CD719420.1|CD719420
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110697303|gb|EE074171.1|EE074171
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|27578893|gb|CB001588.1|CB001588
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|71872498|gb|DT021553.1|DT021553
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110391006|gb|EC955957.1|EC955957
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110381321|gb|EC946648.1|EC946648
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110689568|gb|EE065904.1|EE065904
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|161706917|gb|FC057255.1|FC057255
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110724371|gb|EE100139.1|EE100139
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|161718729|gb|FC065055.1|FC065055
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|32249007|gb|CD714826.1|CD714826
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110372585|gb|EC936766.1|EC936766
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|351025722|gb|FQ426736.1|FQ426736
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110379627|gb|EC944837.1|EC944837
EST:     GAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: GAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110705961|gb|EE083407.1|EE083407
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|34544550|gb|CF512782.1|CF512782
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|77577969|gb|DV217745.1|DV217745
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110698138|gb|EE075804.1|EE075804
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|28959549|gb|CB339775.1|CB339775
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTT-TGGA-GAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|30251904|gb|CB969637.1|CB969637
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110725704|gb|EE102513.1|EE102513
EST:     GAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: GAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110705728|gb|EE082910.1|EE082910
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|352782692|gb|FQ476772.1|FQ476772
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|161708886|gb|FC060915.1|FC060915
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110721044|gb|EE097594.1|EE097594
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110360882|gb|EC924324.1|EC924324
EST:     TTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: TTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|110694822|gb|EE072276.1|EE072276
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|71876625|gb|DT025680.1|DT025680
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
EST: gi|71861000|gb|DT010055.1|DT010055
EST:     CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAAC                         ACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG
genomic: CCTCTTTGGACGGGAGAAGCCGGTCCACACAGTTCTCGGCGGAGGAAAACgtaaggacct ... tttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgccctaactttatcctcttcgtggggtttgttgctgtgttcatttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTGGCGGAGCCACTGCCATGTGGGTGCTTTTCGAATTGCTTGAATACCATCT
                                         ttcattt  CT-rich tract
                                         ttcatttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttttttttaatatatttgagggatttgtttgttccgggtctctcatgccctaactttatcctcttcgtggggtttgttgctgtgttcatttaatgcagACGCTGATGTATTTTTGTGGAGGAACAAGAAGATCTCTGCCGGAGTACTTGGCGGAGCCACTGCCATGTGGGTGCTTTTCGAATTGCTTGAATACCATCT

- - - - - - - - - - - - - - - - - - - - - - tcatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttc