1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agccaatagaaacatagtaactttttgatgtgcactctatattaagtgaattgggtatgtgcattaattttttgtttcgatttggaatgagggcatgcagGAATGCAGGGATCTTTGATCCATGGGGCTGGCAGTGTGTTGGGTTCAACGCATATGGACCATTCATTTGTTGTGTTGCCAAAGCAGAGAAACCAGGCACA
species | Vitis vinifera |
transcript | Vv15s0046g00950.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCGTCGACTCCTACGCCGACAAGTTCTACTCCGACTCCTCTCGCTCTG GAATGCAGGGATCTTTGATCCATGGGGCTGGCAGTGTGTTGGGTTCAACGCEST: gi|71861632|gb|DT010687.1|DT010687
genomic: CGGCGTCGACTCCTACGCCGACAAGTTCTACTCCGACTCCTCTCGCTCTGgttagggttt ... gggcatgcagGAATGCAGGGATCTTTGATCCATGGGGCTGGCAGTGTGTTGGGTTCAACGC
EST: CGGCGTCGACTCCTACGCCGACAAGTTCTACTCCGACTCCTCTCGCTCTG GAATGCAGGGATCTTTGATCCATGGGGCTGGCAGTGTGTTGGGTTCAACGCEST: gi|71859870|gb|DT008925.1|DT008925
genomic: CGGCGTCGACTCCTACGCCGACAAGTTCTACTCCGACTCCTCTCGCTCTGgttagggttt ... gggcatgcagGAATGCAGGGATCTTTGATCCATGGGGCTGGCAGTGTGTTGGGTTCAACGC
EST: CGGCGTCGACTCCTACGCCGACAAGTTCTACTCCGACTCCTCTCGCTCTG GAATGCAGGGATCTTTGATCCATGGGGCTGGCAGTGTGTTGGGTTCAACGCEST: gi|110708620|gb|EE086373.1|EE086373
genomic: CGGCGTCGACTCCTACGCCGACAAGTTCTACTCCGACTCCTCTCGCTCTGgttagggttt ... gggcatgcagGAATGCAGGGATCTTTGATCCATGGGGCTGGCAGTGTGTTGGGTTCAACGC
EST: CGGCGTCGACTCCTACGCCGACAAGTTCTACTCCGACTCCTCTCGCTCTG GAATGCAGGGATCTTTGATCCATGGGGCTGGCAGTGTGTTGGGTTCAACGCEST: gi|161717747|gb|FC068155.1|FC068155
genomic: CGGCGTCGACTCCTACGCCGACAAGTTCTACTCCGACTCCTCTCGCTCTGgttagggttt ... gggcatgcagGAATGCAGGGATCTTTGATCCATGGGGCTGGCAGTGTGTTGGGTTCAACGC
EST: CGGCGTCGACTCCTACGCCGACAAGTTCTACTCCGACTCCTCTCGCTCTG GAATGCAGGGATCTTTGATCCATGGGGCTGGCAGTGTGTTGGGTTCAACGC
genomic: CGGCGTCGACTCCTACGCCGACAAGTTCTACTCCGACTCCTCTCGCTCTGgttagggttt ... gggcatgcagGAATGCAGGGATCTTTGATCCATGGGGCTGGCAGTGTGTTGGGTTCAACGC
gtgaattgggtatgtgcattaattttttgtttcgatttggaatgagggcatgcagGAATGCAGGGATCTTTGATCCATGGGGCTGGCAGTGTGTTGGGTTCAACGCATATGGACCATTCATTTGTTGTGTTGCCAAAGCAGAGAAACCAGGCACA
cattaat putative branch site (score: 3)
attaattttttgtttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agccaatagaaacatagtaactttttgatgtgcactctatattaagtgaattgggtatgtgcattaattttttgtttcgatttggaatgagggcatgcagGAATGCAGGGATCTTTGATCCATGGGGCTGGCAGTGTGTTGGGTTCAACGCATATGGACCATTCATTTGTTGTGTTGCCAAAGCAGAGAAACCAGGCACA
- - aatagaa
- - - - - - - - - - - - - - - tgcactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaatga