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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtctttctttctcttcatttccccccttttcccccataaattcaacttgtataaacaatctgaatctcctctggttaacgtttttttgtttctatttttccctaatttgagGCCACTGTTGGATCCAGTGGGCGACCTTCCAATCGCACAGTCGTTTTCAG

Basic information

species Vitis vinifera
transcript Vv15s0046g00180.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110412945|gb|EC978712.1|EC978712
EST:     GAGCTTTGGACTCCAACTCCAGCCTCAAGCACTCTTCTTTTTTCCAGCTT                         GCCACTGTTGGATCCAGTGGGCGACCTTCCAATCGCACAGTCGTTTTCAG
genomic: GAGCTTTGGACTCCAACTCCAGCCTCAAGCACTCTTCTTTTTTCCAGCTTgtgtgtcttt ... ctaatttgagGCCACTGTTGGATCCAGTGGGCGACCTTCCAATCGCACAGTCGTTTTCAG
EST: gi|110730732|gb|EE108144.1|EE108144
EST:     AAGCTTTGGACTCCAACTCCAGCCTCAAGCACTCTTCTTTTTTCCAGCTT                         GCCACTGTTGGATCCAGTGGGCGACCTTCCAATCGCACAGTCGTTTTCAG
genomic: GAGCTTTGGACTCCAACTCCAGCCTCAAGCACTCTTCTTTTTTCCAGCTTgtgtgtcttt ... ctaatttgagGCCACTGTTGGATCCAGTGGGCGACCTTCCAATCGCACAGTCGTTTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctgaatctcctctggttaacgtttttttgtttctatttttccctaatttgagGCCACTGTTGGATCCAGTGGGCGACCTTCCAATCGCACAGTCGTTTTCAG
                                           ccctaat  putative branch site (score: 3)
                        tttttttgtttctatt  CT-rich tract
                        tttttttgtttctatt  TA-rich tract