Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaagacccaaccttcaatgctctaatatgccctgttattacaatgcagctttcaagatcttaacgtatgcttggcatagGATGTTGTGAATGGTGGACAAAAAGATCAAAAAGAGTTGCTACACTAGAGTTTGACCGCATTCGCAAATCAATGAGTGTTCTCGTCCGTGAGCCCACTGG

Basic information

species Vitis vinifera
transcript Vv15s0046g00040.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g00040.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G05890.1 (Glycine max), 3'ss of exon 1
---gtaagcaagacccaacctt-caatgctctaata---tgccctgttattacaatgc---agctttcaagatcttaacgtatgcttg--gcatagGATGTTGTGAATGGTGGACAAAAAGATCAAAAAGAGTTGCTACACTAGAGTTTGACCGCATTCGCAAATCAATGAGTGTTCTCGTCCGTGAGCCCACTGG
      || | |||  ||| ||          ||||   || |    |  ||   |||      |  |||  | ||     ||  |||  | | |||||| ||||| |||||||  |||||||| ||||  || |||||| | |||||||| || ||||| || |||||||||||  | || ||||| || | |||
gttagcagaaggacttaactttatggaaggtgaatagattgtctaagtgctatggtgctaggagtaacaaagtattgtttaatttttgctgtacagGATGCTGTGAGTGGTGGAATAAAAGATCCAAAAAGGTAGCTACATTGGAGTTTGATCGAATTCGGAAGTCAATGAGTGTCATTGTTCGTGAACCAAATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71872342|gb|DT021397.1|DT021397
EST:     CACACAGCTTGCTGCAAGCTATTTGATTGATCGCAGTACGGTGAAGTTAG                         GATGTTGTGAATGGTGGAC
genomic: CACACAGCTTGCTGCAAGCTATTTGATTGATCGCAGTACGGTGAAGTTAGgtaagcaaga ... cttggcatagGATGTTGTGAATGGTGGAC
EST: gi|71865866|gb|DT014921.1|DT014921
EST:     CACACAGCTTGCTGCAAGCTATTTGATTGATCGCAGTACGGTGAAGTTAG                         GATGTTGTGAATGGTGGAC
genomic: CACACAGCTTGCTGCAAGCTATTTGATTGATCGCAGTACGGTGAAGTTAGgtaagcaaga ... cttggcatagGATGTTGTGAATGGTGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgccctgttattacaatgcagctttcaagatcttaacgtatgcttggcatagGATGTTGTGAATGGTGGACAAAAAGATCAAAAAGAGTTGCTACACTAGAGTTTGACCGCATTCGCAAATCAATGAGTGTTCTCGTCCGTGAGCCCACTGG
                                 tcttaac  putative branch site (score: 2)
          ttattacaat  TA-rich tract