1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcatttaatgctttttttatgtttgattattttctgatttgatttctgcatcttttgcaccaattctaaatgggttgttgccttattatctctcttccagGGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCGAATGGACCAG
species | Vitis vinifera |
transcript | Vv15s0045g00310.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCGTCGGACGGCCACAGCAGCTCCGGAGGTCGGATCCAACGGACAAAG GGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCGAATGGACCAGEST: gi|110732023|gb|EE106947.1|EE106947
genomic: CTTCGTCGGACGGCCACAGCAGCTCCGGAGGTCAGATCCAACGGACAAAGgtactcctcc ... tctcttccagGGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCGAATGGACCAG
EST: CTTCGTCGGACGGCCACAGCAGCTCCGGAGGTCAGATCCAACGGACAAAG GGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCAAATGGACCAGEST: gi|71875892|gb|DT024947.1|DT024947
genomic: CTTCGTCGGACGGCCACAGCAGCTCCGGAGGTCAGATCCAACGGACAAAGgtactcctcc ... tctcttccagGGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCGAATGGACCAG
EST: CTTCGTCGGACGGCCACAGCAGCTCCGGAGGTCAGATCCAACGGACAAAG GGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCGAATGGACCAGEST: gi|29781538|gb|CB346072.2|CB346072
genomic: CTTCGTCGGACGGCCACAGCAGCTCCGGAGGTCAGATCCAACGGACAAAGgtactcctcc ... tctcttccagGGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCGAATGGACCAG
EST: CTTCGTCGGACGGCCACAGCAGCTCCGGAGGTCAGATCCAACGGACAAAG GGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCGAATGGACCAGEST: gi|161706121|gb|FC056257.1|FC056257
genomic: CTTCGTCGGACGGCCACAGCAGCTCCGGAGGTCAGATCCAACGGACAAAGgtactcctcc ... tctcttccagGGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCGAATGGACCAG
EST: CTTCGTCGGACGGCCACAGCAGCTCCGGAGGTCAGATCCAACGGACAAAG GGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCGAATGGACCAGEST: gi|110702955|gb|EE079378.1|EE079378
genomic: CTTCGTCGGACGGCCACAGCAGCTCCGGAGGTCAGATCCAACGGACAAAGgtactcctcc ... tctcttccagGGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCGAATGGACCAG
EST: CTTCGTCGGACGGCCACAGCAGCTCCGGAGGTCAGATCCAACGGACAAAG GGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCAAATGGACCAG
genomic: CTTCGTCGGACGGCCACAGCAGCTCCGGAGGTCAGATCCAACGGACAAAGgtactcctcc ... tctcttccagGGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCGAATGGACCAG
ctgcatcttttgcaccaattctaaatgggttgttgccttattatctctcttccagGGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCGAATGGACCAG
ttctaaa putative branch site (score: 2)
ttgccttattatctct putative PPT
aattctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttaatgctttttttatgtttgattattttctgatttgatttctgcatcttttgcaccaattctaaatgggttgttgccttattatctctcttccagGGTTTAGAACTGCTCATTGAGCAGTGAGCTGTTTGACCCGAATGGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctta