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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatggttttctgttttttactgcctcggtagCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGGGTAGGCATCTGTTT

Basic information

species Vitis vinifera
transcript Vv15s0045g00030.t01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattgtcacttcttcaagcttacatggttttctgttttttactgcctcggtagCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGGGTAGGCATCTGTTT
                  agcttac  putative branch site (score: 3)
                             ttttctgttttttact  putative PPT
                             ttttctgtttttta  TA-rich tract