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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatttatttatttttttaataatacaaaaagatggctaggttaaaaggatcaggttctacactctggtgaagGTCCTATACATGTAGTGAAGTGGAGAACAAGTCCCATTGCTTGGGCTAATGATGCAGGTGTAAAAGTTTATGATACTGCTAATGATCAGCGTATAACATT

Basic information

species Vitis vinifera
transcript Vv15s0024g01120.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0024g01120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G19660.2 (Glycine max), 3'ss of exon 2
----------------------------------------gtcatttatttatttttttaataatacaaaaagatggctaggttaaaaggatc---------aggttctacactctggtgaagGTCCTATACATGTAGTGAAGTGGAGAACAAGTCCCATTGCTTGGGCTAATGATGCAGGTGTAAAAGTTTATGATACTGCTAATGATCAGCGTATAACATT
                                            |   |||  ||| ||||  ||| ||  |    ||            | |         ||||| | ||||||||||||||| | |||||||  ||||| |||||| ||||||   |||||||||||||||||||||| || || |||||||||||||| |                   
gtttgtaagaatgttttattacttagcacatattttctcaacagtaccttttgtttgttaacgataaaattaccccgccctaccctccccaccctccccaaaagGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCA-------------------

upper sequence: Vv15s0024g01120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G08840.1 (Glycine max), 3'ss of exon 2
----------------------------------------gtcatttatttatttttttaataatacaaaaagatggctaggttaaaaggatcaggttctacactctggtgaagGTCCTATACATGTAGTGAAGTGGAGAACAAGTCCCATTGCTTGGGCTAATGATGCAGGTGTAAAAGTTTATGATACTGCTAATGATCAGCGTATAACATT
                                            | | |||  ||| ||||  ||| ||  |    ||            |  ||||| | ||||||||||||||| | |||||||  ||||| |||||| ||||||   ||||||||| |||||||||||| || || |||||||||||||| |                   
gtttgtaagaatgttttattacttatcacatatgttctcaacagtatcttttgtttgttaacgataaaattaccccgccctaccctccccaaaagGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGTTAATGATGCAGGAGTGAAGGTTTATGATACTGCCA-------------------

upper sequence: Vv15s0024g01120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G08190.1 (Arabidopsis thaliana), 3'ss of exon 2
------------gtcatttatttat-ttttttaataatacaaa---aagatggctaggttaaaaggat-------caggttctacactctggtgaagGTCCTATACATGTAGTGAAGTGGAGAACAAGTCCCATTGCTTGGGCTAATGATGCAGGTGTAAAAGTTTATGATACTGCTAATGATCAGCGTATAACATT
            ||   |   |||  ||||  ||||  |   |   |   ||  |  | ||| ||| |        |||| || || ||||| |||||||| || |||   ||||||||||||  ||||| ||| || |||||||||||||  ||||| |||||||||||||| || |                   
gtttgtgagaatgtgggtagattacgttttggaatagaatctactcaccgtgaatttgataagaggctagttttgtagGTGCTGCATTCTGGGGAAGGTCCAATTCATTCTGTGAAGTGGAGAGGAAGTCTCATCGCCTGGGCTAATGATGTTGGTGTTAAAGTTTATGATACAGCCA-------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataatacaaaaagatggctaggttaaaaggatcaggttctacactctggtgaagGTCCTATACATGTAGTGAAGTGGAGAACAAGTCCCATTGCTTGGGCTAATGATGCAGGTGTAAAAGTTTATGATACTGCTAATGATCAGCGTATAACATT
 ttttaat  putative branch site (score: 3)
     tacaaaaa  TA-rich tract