Sequence
atgc intronic sequence ATGC exonic sequence...tgtaaattaactgaatgaaagtgttattaagttattttattttatttttatttttaaattttttatttgagttgaggtttttcggttttggtgatgtcagGGGCTTACATGTATGTTTCTGAATTATGGAGAAAGAAGCAGTCCGATGTTATGAGGTTTCTGCAGAGGGTCAGGTGCTGGGAGTATCGCCAACACCCTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G15230.1 (Glycine max), 3'ss of exon 1
tg-taaattaactgaatgaaagtgttattaagttattttattttatttttatttttaaattttttatttgagttgaggtttttcggttttggtgatgtcagGGGCTTACATGTATGTTTCTGAATTATGGAGAAAGAAGCAGTCCGATGTTATGAGGTTTCTGCAGAGGGTCAGGTGCTGGGAGTATCGCCAACACCCTTC
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tgctgatttctattagttatgctggttgagctttctatcatagcatttttgttattctagtgaa-attaggcattatttgtgttggtttatgttgcaatagGTGCCTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTATGAGATTCTTGCAGCGGGTGAGGTGCTGGGAGTATCGCCAGCAACCTTC
upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G04870.1 (Glycine max), 3'ss of exon 1
--tgtaaattaactgaatgaaagtgttatt-aagttattttattttatttttatttttaaattttttatttgagttga--ggtttttcggttttggtgatgtcagGGGCTTACATGTATGTTTCTGAATTATGGAGAAAGAAGCAGTCCGATGTTATGAGGTTTCTGCAGAGGGTCAGGTGCTGGGAGTATCGCCAACACCCTTC
| || | | || || |||| |||| | ||| | ||| |||| ||| | | | |||| ||| | || | || ||| ||||||| ||||||||| || ||||| | ||||||||||| ||||||||||| || ||||| |||| |||||||||||||| ||||| || |||||
gcctttctttcatagcatttt--tgctattcaagtgaaattaggcattgtttgttttggaatgagtga---aaattgattattttattggaatatgttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTATGAGATTCTTGCAGCGGGTGAGGTGCTGGGAGTACCGCCAGCAACCTTC
upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G41620.1 (Glycine max), 3'ss of exon 1
tgtaaattaactgaatgaaagtgttattaagttattttattttatttttatttttaaattt---tttatttgagttgaggtttt--tcggttttggtgatgtcagGGGCTTACATGTATGTTTCTGAATTATGGAGAAAGAAGCAGTCCGATGTTATGAGGTTTCTGCAGAGGGTCAGGTGCTGGGAGTATCGCCAACACCCTTC
|| | | | | || | | | ||| | | | | | | || || | || || | || |||| | ||| | || ||| || |||| ||||||||| || ||||| | ||||||||||| ||||| ||| | || ||||| |||| ||||||||||||||| | || || |||||
-----atatatagcttttggttattctgatggaattatgtgtggtacctgtgttggaagtgtaattgataaaacgtgttgtttatgttggtgtgattggcaatagGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTC
upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 1
tgtaaattaactgaatgaaagtgttattaagttattttattttatttttatttttaaattttttatttgagttgaggtt---tttcggttttggtgatgtcagGGGCTTACATGTATGTTTCTGAATTATGGAGAAAGAAGCAGTCCGATGTTATGAGGTTTCTGCAGAGGGTCAGGTGCTGGGAGTATCGCCAACACCCTTC
||| || | | | | || | | | || | | || | ||| ||| | | | | || ||| | | | |||| |||| |||| || |||| || || || || ||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| || |||||
-gtatgtttctcactattatctctctctcagatgtcgt-ttctgtattgttcattagattctagaagttaattaaggatgaaatgtgatttt--tgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC
upper sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G16720.1 (Arabidopsis thaliana), 3'ss of exon 1
-------------------------------------------tgtaaattaactgaatgaaagtgttattaagttattttattttatttttat-ttttaaattttttatttgagttga---ggtttttcggttttggtgatgtcagGGGCTTACATGTATGTTTCTGAATTATGGAGAAAGAAGCAGTCCGATGTTATGAGGTTTCTGCAGAGGGTCAGGTGCTGGGAGTATCGCCAACACCCTTC
|| ||| | || | | | ||| || | | || ||| | || || | ||||| | | | || | ||| |||| | ||| || |||| |||||| ||||| ||||||| ||||| ||||||||||| ||||| || || |||||||| |||||||||||||| | || || |||||
gtaaatccttcttctccatcccttcttctagatcaaatcctctcgtttcttagatcgattcagcttctccattgtttgttcaaatgatgtttctgttacgtatctgttattgcaaactacttagcttaatgatttgattgatat-agGTGCGTACAAGTATGTATCTGAGCTATGGAGGAAGAAACAGTCCGATGTGATGAGATTCCTCCAGAGGGTTAGGTGCTGGGAGTACAGACAGCAACCTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttatttttaaattttttatttgagttgaggtttttcggttttggtgatgtcagGGGCTTACATGTATGTTTCTGAATTATGGAGAAAGAAGCAGTCCGATGTTATGAGGTTTCTGCAGAGGGTCAGGTGCTGGGAGTATCGCCAACACCCTTC
tttttaaattttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtaaattaactgaatgaaagtgttattaagttattttattttatttttatttttaaattttttatttgagttgaggtttttcggttttggtgatgtcagGGGCTTACATGTATGTTTCTGAATTATGGAGAAAGAAGCAGTCCGATGTTATGAGGTTTCTGCAGAGGGTCAGGTGCTGGGAGTATCGCCAACACCCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- -aaattaa
- - - - - - -aatgaaa