1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtttctcttccgtcactgtggaaaaaggagagccttttaacaccgagatagagatatatgtgtgtatgtatatatatatataaaggccaaaccgttttgcattattgtcttaggttttctccaactctcagctctcagctctctactctctactctctcttggttgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGGAAATGCTGGACTACGAATGGGGGAACCCATCTCCGATCATGCTCTCCGG
species | Vitis vinifera |
transcript | Vv15s0021g02300.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGGEST: gi|351034276|gb|FQ448073.1|FQ448073
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGGEST: gi|352798778|gb|FQ478413.1|FQ478413
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGGEST: gi|71877182|gb|DT026237.1|DT026237
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGGEST: gi|110693740|gb|EE070236.1|EE070236
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGGEST: gi|71876487|gb|DT025542.1|DT025542
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGGEST: gi|110684597|gb|EE062056.1|EE062056
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGGEST: gi|351037488|gb|FQ460687.1|FQ460687
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGGEST: gi|71870483|gb|DT019538.1|DT019538
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGGEST: gi|71867687|gb|DT016742.1|DT016742
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
EST: AGTACTCCTCGTTCGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAG ATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
genomic: AGTACTCCTCGTTAGTCTTTGTCTTTTCACTCGGTTTCATGCTGCCATAGgtgagtttct ... tgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGG
tccaactctcagctctcagctctctactctctactctctcttggttgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGGAAATGCTGGACTACGAATGGGGGAACCCATCTCCGATCATGCTCTCCGG
ctctctactctctact CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttctcttccgtcactgtggaaaaaggagagccttttaacaccgagatagagatatatgtgtgtatgtatatatatatataaaggccaaaccgttttgcattattgtcttaggttttctccaactctcagctctcagctctctactctctactctctcttggttgtgcttcagATCGAGTTGAGGGCCTTTGGAACAACGTCGTCAAACCTGAGCTTCAGTGGGAAATGCTGGACTACGAATGGGGGAACCCATCTCCGATCATGCTCTCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA