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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtatccctcttccactcttcattttacttcaaagtttctgctttttgttgttgatgttttggaggtttcgaataaaggtgtgatttttcttgctttttcttttgtggatttgtttgggttttagTGGTGGCGTGTCAAGCGGTTGCCAACATTGTAAAGTCCTCTCTCGGGCCTGTTGGACTGGACAAG

Basic information

species Vitis vinifera
transcript Vv15s0021g02230.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349825285|gb|FQ418006.1|FQ418006
EST:     CGATATTATGGGCGAACGTCAGTCGGGCCAGGACGTCCGTTCTCAAAACG                         TGGTGGCGTGTCAAGCGGTTGCCAACATTGTAAAGTCCTCTCTCGGGCCTG
genomic: CGATATTATGGGCGAACGTCAGTCGGGCCAGGACGTCCGTTCTCAAAACGgtagtatccc ... tgggttttagTGGTGGCGTGTCAAGCGGTTGCCAACATTGTAAAGTCCTCTCTCGGGCCTG
EST: gi|110691850|gb|EE070424.1|EE070424
EST:     CGATATTATGGGCGAACGTCAGTCGGGCCAGGACGTCCGTTCTCAAAATG                         TGGTGGCGTGTCAAGCGGTTGCCAACATTGTAAAGTCCTCTCTCGGGCCTG
genomic: CGATATTATGGGCGAACGTCAGTCGGGCCAGGACGTCCGTTCTCAAAACGgtagtatccc ... tgggttttagTGGTGGCGTGTCAAGCGGTTGCCAACATTGTAAAGTCCTCTCTCGGGCCTG
EST: gi|351026648|gb|FQ436301.1|FQ436301
EST:     CGATATTATGGGCGAACGTCAGTCGGGCCAGGACGTCCGTTCTCAAAACG                         TGGTGGCGTGTCAAGCGGTTGCCAACATTGTAAAGTCCTCTCTCGGGCCTG
genomic: CGATATTATGGGCGAACGTCAGTCGGGCCAGGACGTCCGTTCTCAAAACGgtagtatccc ... tgggttttagTGGTGGCGTGTCAAGCGGTTGCCAACATTGTAAAGTCCTCTCTCGGGCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaataaaggtgtgatttttcttgctttttcttttgtggatttgtttgggttttagTGGTGGCGTGTCAAGCGGTTGCCAACATTGTAAAGTCCTCTCTCGGGCCTGTTGGACTGGACAAG
                                       tttgttt  CT-rich tract
                        tttttctttt  TA-rich tract