1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcaagagatggaattttgttctctgcatttaattcctgaaatgctaatgtgcccagataaagtagcagctgtttgtgtgatcatgtaaatccttttgtagGTGTTCCTCCTTCCACTGCTGTAGCTGTAACAAGTTCCAGTACTACTGCTGTTCAGACATCATCATCCCTGGTTGTAGCTTCTAGTAGTGG
species | Vitis vinifera |
transcript | Vv15s0021g02200.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
aatgtgcccagataaagtagcagctgtttgtgtgatcatgtaaatccttttgtagGTGTTCCTCCTTCCACTGCTGTAGCTGTAACAAGTTCCAGTACTACTGCTGTTCAGACATCATCATCCCTGGTTGTAGCTTCTAGTAGTGG
tgctaat putative branch site (score: 2)
tccttttgt putative PPT
ataaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagagatggaattttgttctctgcatttaattcctgaaatgctaatgtgcccagataaagtagcagctgtttgtgtgatcatgtaaatccttttgtagGTGTTCCTCCTTCCACTGCTGTAGCTGTAACAAGTTCCAGTACTACTGCTGTTCAGACATCATCATCCCTGGTTGTAGCTTCTAGTAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
-caagaga
- - - - - - - - - -tctctgc
- - - - - - - - - - - - - - - - ttcctga
- - - - - - - - - - - - - - - - - - - - - gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - agataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgta