Sequence
atgc intronic sequence ATGC exonic sequencegtatgcaaaataacttttaacacatctcagggctaatttgttttagtgctgtgttgaatgaaaatggcttgtaataactatagagtattacacattatgcatgaaaatgatcattagggtttgtttgtttcagtgaattcatcatttattaatatatatatgcattctatatttgatttcgatcctttctattttgctagGTAAAACAACTACTGTGAAGACAAGATACACAGTCATGTCCAAGGAAATCTTAGAGAAGTACCCTGAACTTGCCACGGAGGGTTCGCCCACGATCAAACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g02170.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G13900.1 (Glycine max), 3'ss of exon 1
gtatgcaaaataacttttaacacatctcagggctaatttgttttagtgctgtgttgaatgaaaatggcttgtaataactatagagtattacacattatgcatgaaaatgatcattagggtttgtttgtttcagtgaattcatcatttattaatatatatatgcattctatatttgatttcgatcctttctattttgctagGTAAAACAACTACTGTGAAGACAAGATACACAGTCATGTCCAAGGAAATCTTAGAGAAGTACCCTGAACTTGCCACGGAGGGTTCGCCCACGATCAAACA
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--------------------------------------------------------------------------------------------aactactaacaaaaata-----tgtgcataatttgaatcactatatataaaaac-attacta-atctaaactgccaacactttcttccttcattttccattt-gtcagGCAAGAACACCACTGTGAAGACAAGGTACACAGTGATGTCAAAGGAGATCCTTGACAAGTACCCAGAATTGGCCACAGAGGGCTCACCAACCATAAGGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37190685|gb|CF610034.1|CF610034EST: TGATACTAAGTGCCAAGACTTGGCCATTAAGGAGAAACTAGAGCGCTTGT GTAAAACAACTACTGTGAAGACAAGATACACAGTCATGTCCAAGGAAATCT
genomic: TGATACTAAGTGCCAAGACTTGGCCATAAAGGAGAAACTAGAGCGCTTGTgtatgcaaaa ... attttgctagGTAAAACAACTACTGTGAAGACAAGATACACAGTCATGTCCAAGGAAATCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttattaatatatatatgcattctatatttgatttcgatcctttctattttgctagGTAAAACAACTACTGTGAAGACAAGATACACAGTCATGTCCAAGGAAATCTTAGAGAAGTACCCTGAACTTGCCACGGAGGGTTCGCCCACGATCAAACA
tcctttctattttgct CT-rich tract
aatatatatatgcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcaaaataacttttaacacatctcagggctaatttgttttagtgctgtgttgaatgaaaatggcttgtaataactatagagtattacacattatgcatgaaaatgatcattagggtttgtttgtttcagtgaattcatcatttattaatatatatatgcattctatatttgatttcgatcctttctattttgctagGTAAAACAACTACTGTGAAGACAAGATACACAGTCATGTCCAAGGAAATCTTAGAGAAGTACCCTGAACTTGCCACGGAGGGTTCGCCCACGATCAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT