Sequence
atgc intronic sequence ATGC exonic sequence...tatagtgggggaagataaatacaaactgttcacagatatacttattaggatccgacaaaaagtggatacccattgaactaaatcttgtttccatttgcagATTCGATTCAGCACAAGTGTTCCATGTAATGATACACAGTAATCAGACATGGAAAGAATTCCAGAGTCAAAGAAAACGCTTCCTGGGCAATTGCCAATTG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33403762|gb|CF209389.1|CF209389EST: CCTTCAGTGAACCAAGGTTCGTCTGTACGAACACCTCTTCCCCACCACTG ATTCGATTCAGCACAAGTGTTCCATGTAATGATACACAGTAATCAGACATG
genomic: CCTTCAGTGAACCAAGGTTCGTCTGTACGAACACCTCTTCCCCACCACTGgtttgttcat ... ccatttgcagATTCGATTCAGCACAAGTGTTCCATGTAATGATACACAGTAATCAGACATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taggatccgacaaaaagtggatacccattgaactaaatcttgtttccatttgcagATTCGATTCAGCACAAGTGTTCCATGTAATGATACACAGTAATCAGACATGGAAAGAATTCCAGAGTCAAAGAAAACGCTTCCTGGGCAATTGCCAATTG
aactaaa putative branch site (score: 2)
tcttgtttccattt CT-rich tract
aactaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatagtgggggaagataaatacaaactgttcacagatatacttattaggatccgacaaaaagtggatacccattgaactaaatcttgtttccatttgcagATTCGATTCAGCACAAGTGTTCCATGTAATGATACACAGTAATCAGACATGGAAAGAATTCCAGAGTCAAAGAAAACGCTTCCTGGGCAATTGCCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - gtggggg
- - - - - -aagataa
- - - - - - - - - atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaaa