Sequence
atgc intronic sequence ATGC exonic sequence...agaggcacataattcaagaatgtggggtaaaatactgattgccttcctttcatgggcttaatagtatctaaatgaagggcaattctttattttttggtagGTATTATGGCAACCATTAGAAATTTGAAGATCAAGACAAGTACATGCAAACGCATCATTAAGGAGTTCCATTCCTATGAGAAAGAGGTTGAAAGAGAAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g01180.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G35770.1 (Glycine max), 3'ss of exon 1
agaggcacataattcaagaatgtggggtaaaatactgattgccttcctttcatgggcttaatagtatctaaatgaagggcaattctttat--tttttg-----gtagGTATT--ATGGCAACCATTAGAAATTTGAAGATCAAGACAAGTACATGCAAACGCATCATTAAGGAGTTCCATTCCTATGAGAAAGAGGTTGAAAGAGAAGC
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------atata-tatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaacccccttctctgtggtttttgtggatgtagGTTTTGAATGGCAACTGTGAGAAGTCTGAAGATCAAGACAAGTACCTGCAAACGTATAGTGAAGGAGCTGCATTCTTATGAGAAGGAAGTTGAGAGAGAA--
upper sequence: Vv15s0021g01180.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G34820.2 (Glycine max), 3'ss of exon 1
agaggcacataattcaagaatgtggggtaaaatactgattgccttcctttcatgggcttaatagtatctaaatgaagggcaattctttattttttggtagGTATTATGGCAACCATTAGAAATTTGAAGATCAAGACAAGTACATGCAAACGCATCATTAAGGAGTTCCATTCCTATGAGAAAGAGGTTGAAAGAGAAGC-
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----gta-ataattgctgcttgctgcattctttaacaatggctatgttttgttttttgaattaatgt-----tgaaaagc--ttcgttgtggtttagAATG----GCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACGTATAGTGAAGGAGCTGCATTCTTATGAGAAGGAAGTTGAGAGAGAAGCT
upper sequence: Vv15s0021g01180.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G34820.1 (Glycine max), 3'ss of exon 1
agaggcacataattcaagaatgtggggtaaaatactgattgccttccttt-catgggct---taatagtatctaaatgaagggc-aattctttattttttggtagGTATTATGGCAACCATTAGAAATTTGAAGATCAAGACAAGTACATGCAAACGCATCATTAAGGAGTTCCATTCCTATGAGAAAGAGGTTGAAAGAGAAGC-
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------gtaccgtcgttgcatgtaataattgctgcttgctgcattctttaacaatggctatgttttgttttttgaattaatgttgaaaagcttcgttgtggtttagAATGGCAACAACAGTGAGAAGTCTGAAGATAAAGACAAGTACGTGCAAACGTATAGTGAAGGAGCTGCATTCTTATGAGAAGGAAGTTGAGAGAGAAGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctttcatgggcttaatagtatctaaatgaagggcaattctttattttttggtagGTATTATGGCAACCATTAGAAATTTGAAGATCAAGACAAGTACATGCAAACGCATCATTAAGGAGTTCCATTCCTATGAGAAAGAGGTTGAAAGAGAAGC
atctaaa putative branch site (score: 3)
ttctttatttttt putative PPT
aattctttatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agaggcacataattcaagaatgtggggtaaaatactgattgccttcctttcatgggcttaatagtatctaaatgaagggcaattctttattttttggtagGTATTATGGCAACCATTAGAAATTTGAAGATCAAGACAAGTACATGCAAACGCATCATTAAGGAGTTCCATTCCTATGAGAAAGAGGTTGAAAGAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - gcacata
- - - - - - - - -gaatgtg
- - - - - - - - - - - - -ggtaaaa
- - - - - - - - - - - - - - - - - ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa