1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctaaatataggtagctgtatacacctagcttattcttctccataaggtgcttttgttttattttctttttcctaagcttgtgttattaattgacatccagGCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGGACGGTCCGTTTGCAACTCTG
species | Vitis vinifera |
transcript | Vv15s0021g00640.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAG GCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGGEST: gi|351023599|gb|FQ432982.1|FQ432982
genomic: CTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAGgtcaaatctt ... tgacatccagGCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGG
EST: CTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAG GCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGGEST: gi|351034756|gb|FQ458113.1|FQ458113
genomic: CTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAGgtcaaatctt ... tgacatccagGCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGG
EST: CTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAG GCTACTATTGGTATTGATTTTCTATCAAAGACGATGTACCTTGAAGATCGGEST: gi|349828935|gb|FQ419268.1|FQ419268
genomic: CTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAGgtcaaatctt ... tgacatccagGCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGG
EST: CTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAG GCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGGEST: gi|110700609|gb|EE077413.1|EE077413
genomic: CTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAGgtcaaatctt ... tgacatccagGCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGG
EST: CTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAA GCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGGEST: gi|349824858|gb|FQ414716.1|FQ414716
genomic: CTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAGgtcaaatctt ... tgacatccagGCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGG
EST: CTAGCATCATCGCTCGATTCATGTACGACAAATTCGACAACACCTATCAG GCTACTATTGGTATTGATTTTCTATCAAAGACGATGTACCTTGAAGATCGGEST: gi|110696285|gb|EE075270.1|EE075270
genomic: CTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAGgtcaaatctt ... tgacatccagGCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGG
EST: CTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAG GCTACTATTGGTATTGATTTTCTATCAAAGACGATGTACCTTGAAGATCGG
genomic: CTAGCATCATCACTCGATTCATGTACGACAAATTCGACAACACCTATCAGgtcaaatctt ... tgacatccagGCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGG
ggtgcttttgttttattttctttttcctaagcttgtgttattaattgacatccagGCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGGACGGTCCGTTTGCAACTCTG
ttttgttttattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaatataggtagctgtatacacctagcttattcttctccataaggtgcttttgttttattttctttttcctaagcttgtgttattaattgacatccagGCTACTATTGGTATCGATTTTCTATCAAAGACGATGTACCTTGAAGATCGGACGGTCCGTTTGCAACTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- aaatata
- - - - - - - - - - acaccta
- - - - - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgtg