Sequence
atgc intronic sequence ATGC exonic sequencegttagttcagtctttaattaattctacttttgcatgcaaacatgtgtcggtgattagacccggatatattcttgttcccaattgtggaacacaatgttgaacccaaacccagtttgaattttacgttttgatatgaaattcagATGAAGTGAGGATGTGGGTGTACGAGGAGATATTACCAAGCGGTGAGAAACTCTCAGAAGTCATCAACCAAAACAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G07410.2 (Glycine max), 3'ss of exon 1
gttagttcagtctttaattaattctacttttgcatgcaaacatgtgtcggtgattagacccggatatattcttgttcccaattgtggaacacaatgttgaacccaaacccagtttgaattttacgttttgatatgaaattcagATGAAGTGAGGATGTGGGTGTACGAGGAGATATTACCAAGCGGTGAGAAACTCTCAGAAGTCATCAACCAAAACAAT
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--------------------------cttttat-tgttgttgtttctgtatggtcagac----ata-actttccttagtaaat-----aaacaatctttcctttagaatc---ttaaatttccaattttgatt---aattcagATGAAGTGAGGATGTGGGTATATGAGGAGACACTACTAAGTGGTGAGAAGCTCACAGATGTCATCAATCGAACCAAT
upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G24070.1 (Glycine max), 3'ss of exon 2
gttagttcagtctttaattaattctacttttgcatgcaaacatgtgtcggtgattagacccggatatattcttgttcccaattgtggaacacaatgttgaacccaaacccagtttgaattttacgttttgatatgaaattcagATGAAGTGAGGATGTGGGTGTACGAGGAGATATTACCAAGCGGTGAGAAACTCTCAGAAGTCATCAACCAAAACAAT
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------------------------------tgt-tgtttttttgtttttgt-attatgcttaaacataactttcct-----tagtaaaaaaaaatctttcctttagaatc---ttaaatttccaattttgatg---aatccagATGAAGTGAGGATGTGGGTATATGAGGAGACATTACGAAGTGGTGAGCAGCTCACAGATGTCATCAATCGAACCAAT
upper sequence: Vv14s0219g00280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G23190.1 (Glycine max), 3'ss of exon 1
gttagttcagtctttaattaattctacttttgcatgcaaacatgtgtcggtgattagacccggatatattcttgttcccaattgtggaacacaatgttgaacccaaacccagtttgaattttacgttttgatatgaaattcagATGAAGTGAGGATGTGGGTGTACGAGGAGATATTACCAAGCGGTGAGAAACTCTCAGAAGTCATCAACCAAAACAAT
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---------------------------atctccttcaaccccctcctccatcaccagc----aaaaaaataaaatttccatttg--------aatgttactttt---cccattttaattaatgaattctcggatgtaat-cagATGAAGTGAGAATGTGGGTATTCGAGGAAAAATTACCAAGTGGGGAGAAGCTCACAGATGTTATCAACAAAACCAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acacaatgttgaacccaaacccagtttgaattttacgttttgatatgaaattcagATGAAGTGAGGATGTGGGTGTACGAGGAGATATTACCAAGCGGTGAGAAACTCTCAGAAGTCATCAACCAAAACAAT
ttttgat putative branch site (score: 4)
ttttgatatgaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagttcagtctttaattaattctacttttgcatgcaaacatgtgtcggtgattagacccggatatattcttgttcccaattgtggaacacaatgttgaacccaaacccagtttgaattttacgttttgatatgaaattcagATGAAGTGAGGATGTGGGTGTACGAGGAGATATTACCAAGCGGTGAGAAACTCTCAGAAGTCATCAACCAAAACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT