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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcttttttttttttttctggattttttctgttctatcctttctcttctttcgttttctcttgagattctagtagttacttacttagaattgttgataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTCGTCGTATTTGATATACAACGCGGTTCTCTACTTTAGCTCTGCTGTCCAG

Basic information

species Vitis vinifera
transcript Vv14s0219g00120.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0219g00120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G23610.1 (Glycine max), 3'ss of exon 1
-------------------------------gtttcttttttttttttttctggattttttctgttctatcctttctcttctttcgttttctcttgagattctagtagttacttacttagaattgttgata-aacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTCGTCGTATTTGATATACAACGCGGTTCTCTACTTTAGCTCTGCTGTCCAG
                                | || |   || |  ||||||  |  ||| | || ||||  ||||  ||||     || | |     || |  || ||   |  || || ||     |     ||||||| |||||| ||||||| ||||| ||| |||| || ||||||||||| || || ||| | |||||||| ||   ||| ||||| || |||||||| |||
gtaccactagccaaaaaggcaatgctttttcttatcatcgcttatactttctgtgtaattttttttttatcaattcttatcttgtaacttttttccct-ttattttatttttatgttttgattttccattgtggtgtagTGTGGTGGGGCTGAACTTTGATTTTGTGATGCTGAATTTGACGAAGCACTCCTCCTATCTCATATACAATGCTTCTCTGTACTTCAGTTCTGCTGTTCAG

upper sequence: Vv14s0219g00120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G40670.1 (Arabidopsis thaliana), 3'ss of exon 1
gtttcttttttttttttttctggatt-ttttctgttctatcctttctcttctttcgttttctcttgagattctagtagttacttacttagaattgttgataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTCGTCGTATTTGATATACAACGCGGTTCTCTACTTTAGCTCTGCTGTCCAG
               |  |||    |   || ||||||     || | ||  |   | |    |||| |||  | | | |     ||| |   ||||    ||   |||||||| || ||||||||||| |||||| || | || ||||| ||||| ||||||||| |||| ||||| |     |||||||||||  ||| | | || 
--------------gtaatctaatctaccttttgttcttgagattttgtttctatatctgtagttgaaattgaaattgatgaaatcttggttgtgtttgggaa---agTGTTGTTGGATTGAACTTCGACTTCGTGATGTTGAATTTGACAAAGCACTCGTCGTATATGATCTACAATGTCTGCCTCTACTTTAGTCCTGTTATTCAA

upper sequence: Vv14s0219g00120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ34880 (Selaginella moellendorffii), 3'ss of exon 1
gtttcttttttttttttttctggattttttctgttctatcctttctcttctttcgttttctcttgagattctagtagttacttacttagaattgttgataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTCGTCGTATTTGATATACAACGCGGTTCTCTACTTTAGCTCTGCTGTCCAG
     |     ||   |  | |||    | ||        |  || | | |    ||||  |||    |||| | || || ||       |||| |       | || || |||||| | |||||||||||| || |||||||||| || |||||||| |||||| | || |||||||| |   ||| ||| ||| |||  ||||| 
----gtacgcattcgatcgcgggaagaatacttcctcgctccctcccctttgcgttttttgcttccttttctcg-agctagttttc---gattgct------tgcagCGTCGTGGGGCTCAACTTCGATTTCCTGTTGCTCAACTTCACCAAGCATTCCTCGTATCTCATCTACAACGCCGCCGTCTTCTTCAGCCCTGTCGTCCAA

upper sequence: Vv14s0219g00120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ34881 (Selaginella moellendorffii), 3'ss of exon 1
gtttcttttttttttttttctggattttttctgttctatcctttctcttctttcgttttctcttgagattctagtagttacttacttagaattgttgataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTCGTCGTATTTGATATACAACGCGGTTCTCTACTTTAGCTCTGCTGTCCAG
   |     ||  |   | | |||      || ||| |    |    |  |  | ||| | |||    ||||   || || ||  |    |||| |       | || || ||||| |||||||||||||||  ||||||||| || || |||||||| |||||| | || |||||||| |   ||| ||| ||| |||  ||||| 
--gtacgcattgatcgctgccggaagaaaactattccaattctcgcttcatcccctttgcgctt----ttctca-agctagttttt---gattgct------tgcagCGTCGTGGGATTGAACTTCGATTTCCAGGTGCTCAATTTCACCAAGCATTCCTCGTATCTCATCTACAACGCCGCCGTCTTCTTCAGCCCTGTCGTCCAA

upper sequence: Vv14s0219g00120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ05759 (Selaginella moellendorffii), 3'ss of exon 1
gtttcttttttttttttttctggattttttctgttctatcctttctcttctttcgttttctcttgagattctagtagttacttacttagaattgttgataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTCGTCGTATTTGATATACAACGCGGTTCTCTACTTTAGCTCTGCTGTCCAG
   |     ||  |   | | | |      |||||| |       |||   |||||   || ||| | || |   |    ||   ||   |||| |       | || || || || |||||||||||||||  | |||||||||| || |||||||| |||||| | || |||||||| |   ||| ||| ||| |||  || || 
--gtacgcattgatagctgccgcaagaaaactgttccaa-----ttctcgcttcgtcccct-ttgcgcttttctcaa--gctagtttttgattgct------tgcagCGTCGTAGGATTGAACTTCGATTTCCAGCTGCTCAACTTCACCAAGCATTCCTCGTATCTCATCTACAACGCCGCCGTCTTCTTCAGCCCTGTCGTTCAA

upper sequence: Vv14s0219g00120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ05760 (Selaginella moellendorffii), 3'ss of exon 1
gtttcttttttttttttttctggattttttctgttctatcctttctcttctttcgttttctcttgagattctagtagttacttacttagaattgttgataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTCGTCGTATTTGATATACAACGCGGTTCTCTACTTTAGCTCTGCTGTCCAG
     |     ||   |  | |||    | ||        |  ||    | || |  || | |||   |  |        ||   ||   |||| |       | || || |||||| | |||||||||||| || |||||||||| || |||||||| |||||| | || |||||||| |   ||| ||| ||| |||  ||||| 
----gtacgcattcgatcgcgggaagaatacttcctcgctccctcaggccctttgcgtttttttgctttcttttctcgagctagttttcgattgct------tgcagCGTCGTGGGGCTCAACTTCGATTTCCTGTTGCTCAACTTCACCAAGCATTCCTCGTATCTCATCTACAACGCCGCCGTCTTCTTCAGCCCTGTCGTCCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110723575|gb|EE101045.1|EE101045
EST:     TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAG                         TGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
genomic: TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgtttcttttt ... ataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
EST: gi|351045861|gb|FQ441046.1|FQ441046
EST:     TGGTCCATCAGTTTCTACCCACAAGTCATTTTGAATTTCCGAAGAAAAAG                         TGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
genomic: TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgtttcttttt ... ataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
EST: gi|351030795|gb|FQ438633.1|FQ438633
EST:     TGGTCCATCAGTTTCTACCCACAAGTCATTTTGAATTTCCGAAGAAAAAG                         TGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
genomic: TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgtttcttttt ... ataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
EST: gi|349811028|gb|FQ406016.1|FQ406016
EST:     TGGTCCATCAGTTTCTACCCACAAGTCATTTTGAATTTCCGAAGAAAAAG                         TGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
genomic: TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgtttcttttt ... ataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
EST: gi|110699274|gb|EE076127.1|EE076127
EST:     TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAG                         TGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
genomic: TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgtttcttttt ... ataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
EST: gi|294966259|gb|GW837510.1|GW837510
EST:     TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAG                         TGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
genomic: TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgtttcttttt ... ataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
EST: gi|349820300|gb|FQ403916.1|FQ403916
EST:     TGGTCCATCAGTTTCTACCCACAAGTCATTTTGAATTTCCGAAGAAAAAG                         TGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
genomic: TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgtttcttttt ... ataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
EST: gi|349809992|gb|FQ398617.1|FQ398617
EST:     TGGTCCATCAGTTTCTACCCACAAGTCATTTTGAATTTCCGAAGAAAAAG                         TGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCACTC
genomic: TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgtttcttttt ... ataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
EST: gi|161711864|gb|FC059173.1|FC059173
EST:     TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAG                         TGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
genomic: TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgtttcttttt ... ataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
EST: gi|110696243|gb|EE075180.1|EE075180
EST:     TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAG                         TGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
genomic: TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgtttcttttt ... ataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
EST: gi|161708606|gb|FC060439.1|FC060439
EST:     TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAG                         TGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
genomic: TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgtttcttttt ... ataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
EST: gi|110724366|gb|EE100141.1|EE100141
EST:     TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAG                         TGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
genomic: TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgtttcttttt ... ataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
EST: gi|34549515|gb|CF517747.1|CF517747
EST:     TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAG                         TGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC
genomic: TGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgtttcttttt ... ataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgttttctcttgagattctagtagttacttacttagaattgttgataaacgtagTGTTGTGGGGTTGAACTTCGATTTCGTGGTGCTCAACTTGACGAAGCATTCGTCGTATTTGATATACAACGCGGTTCTCTACTTTAGCTCTGCTGTCCAG
                                 ttagaatt  TA-rich tract