1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catgttttagcgttactggaaatagcatatcaaaaatttgaaatttggtttcgaatgtgttggaacgatgtaacactttttgttcttttttttggtctagGGTTTTCAAGAATCGACGAATTCGAG
species | Vitis vinifera |
transcript | Vv14s0219g00070.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACTCAGACCCACAACCTCTTCAATTTCCCCTCCTCTTCACACTAATCAG GGTTTTCAAGAATCGACGAATTCGAGEST: gi|294964372|gb|GW838175.1|GW838175
genomic: AACTCAGACCCACAACCTCTTCAATTTCCCCTCCTCTTCACACTAATCAGgtgcttctct ... tttggtctagGGTTTTCAAGAATCGACGAATTCGAG
EST: AACTCAGACCCACAACCTCTTCAATTTCCCCTCCTCTTCACACTAATAAG GGTTTTCAAGAATCGACGAATTCGAG
genomic: AACTCAGACCCACAACCTCTTCAATTTCCCCTCCTCTTCACACTAATCAGgtgcttctct ... tttggtctagGGTTTTCAAGAATCGACGAATTCGAG
tggtttcgaatgtgttggaacgatgtaacactttttgttcttttttttggtctagGGTTTTCAAGAATCGACGAATTCGAG
atgtaac putative branch site (score: 3)
ctttttgttctttttt CT-rich tract
tttttgttcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgttttagcgttactggaaatagcatatcaaaaatttgaaatttggtttcgaatgtgttggaacgatgtaacactttttgttcttttttttggtctagGGTTTTCAAGAATCGACGAATTCGAG
catgttt
- - - - - - - - -ggaaata
- - - - - - - - - - - - - - - caaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - gaatgtg