Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatcgtatcaagttgacacgagaatcttggttaaatgatgttgtggatggtacttgtgcctattcgagcggagttttaaattttgcctgcttgtacagTCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTAGAAGTGATACCTTCTTAAAAGATATTGACAACGTGCCGGAAACTGGGTG

Basic information

species Vitis vinifera
transcript Vv14s0171g00490.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128455|gb|CB913794.1|CB913794
EST:     GTCTCCGTTTTCAATTCAAAG                         TCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTA
genomic: GTCTCCGTTTTCAATTCAAAGgtctcttctc ... gcttgtacagTCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTA
EST: gi|294965944|gb|GW839283.1|GW839283
EST:     GTCTTCAGCGTCGTCGTCTCCGTTTTCAATTCAAAG                         TCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTC
genomic: GTCTTCAGCGTCGTCGTCTCCGTTTTCAATTCAAAGgtctcttctc ... gcttgtacagTCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTA
EST: gi|37190597|gb|CF609946.1|CF609946
EST:     TCGTTGAACGGCGTGTCTTCAGCGTCGTCGTCTCCGTTTTCAATTCAAAG                         TCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTC
genomic: TCGTTGAACGGTGTGTCTTCAGCGTCGTCGTCTCCGTTTTCAATTCAAAGgtctcttctc ... gcttgtacagTCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTA
EST: gi|110364929|gb|EC928538.1|EC928538
EST:     TTCAATTCAAAG                         TCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTC
genomic: TTCAATTCAAAGgtctcttctc ... gcttgtacagTCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTA
EST: gi|30128024|gb|CB913363.1|CB913363
EST:     GTCGTCTCCGATTTTCAATTCAAAG                         TCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTA
genomic: GTCGTCTCCG-TTTTCAATTCAAAGgtctcttctc ... gcttgtacagTCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTA
EST: gi|110372969|gb|EC937167.1|EC937167
EST:     TCGTTGAACGGCGTGTCTTCAGCGTCGTCGTCTCCGTTTTCAATTCAAAG                         TCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTC
genomic: TCGTTGAACGGTGTGTCTTCAGCGTCGTCGTCTCCGTTTTCAATTCAAAGgtctcttctc ... gcttgtacagTCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatggtacttgtgcctattcgagcggagttttaaattttgcctgcttgtacagTCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTAGAAGTGATACCTTCTTAAAAGATATTGACAACGTGCCGGAAACTGGGTG
                                          cctgctt  CT-rich tract
                            agttttaaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatatcgtatcaagttgacacgagaatcttggttaaatgatgttgtggatggtacttgtgcctattcgagcggagttttaaattttgcctgcttgtacagTCTAGAAGATGGGATCGAGTACATGGTCTGTCGAGAAACGATCTGGTCTTAGAAGTGATACCTTCTTAAAAGATATTGACAACGTGCCGGAAACTGGGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - ttgacac
- - - - - - - - - - - - - - - - - - - - - - -tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtgc