1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atatagaaaactgaacttcttgaaattttcaaattaggtttatcttcagtggatgttttcttgatacttggctttcttcctttggtgaatgaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT
species | Vitis vinifera |
transcript | Vv14s0171g00330.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|349823939|gb|FQ417326.1|FQ417326
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|71857128|gb|DT006183.1|DT006183
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|33405585|gb|CF211212.1|CF211212
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|71856777|gb|DT005832.1|DT005832
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|110693499|gb|EE069785.1|EE069785
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: TTATCTCCGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|71860914|gb|DT009969.1|DT009969
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|349820893|gb|FQ408601.1|FQ408601
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG TACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|110699690|gb|EE076907.1|EE076907
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|71876529|gb|DT025584.1|DT025584
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|349811881|gb|FQ410678.1|FQ410678
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|161711586|gb|FC061248.1|FC061248
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|37189836|gb|CF609185.1|CF609185
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|349809818|gb|FQ398443.1|FQ398443
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|161713380|gb|FC062785.1|FC062785
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|22008847|gb|BQ793881.1|BQ793881
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: CAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|71857556|gb|DT006611.1|DT006611
genomic: CAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|71860746|gb|DT009801.1|DT009801
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|349819860|gb|FQ404536.1|FQ404536
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|161712482|gb|FC061787.1|FC061787
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|37188441|gb|CF607790.1|CF607790
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: ATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|161707104|gb|FC057294.1|FC057294
genomic: ATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGEST: gi|110690784|gb|EE068257.1|EE068257
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
EST: AGCTCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCG AACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
genomic: AGATCTCTGAGTTGCGTCAACTCTCTGACCACCAAAACGCCGTCGTTGCGgtgagttttt ... gaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGG
tcagtggatgttttcttgatacttggctttcttcctttggtgaatgaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT
tcttgat putative branch site (score: 4)
aatgaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatagaaaactgaacttcttgaaattttcaaattaggtttatcttcagtggatgttttcttgatacttggctttcttcctttggtgaatgaattaacagAACAAATTAATTGAAATGGCTGGAGGAAGGGCAATCCACCAGTTACTGAGGATGAAACTTCGATCACAATCCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -tagaaaa
- - - - - - - -cttcttg
- - - - - - - - - - - - - - -caaatta
- - - - - - - - - - - - - - - - - - - - - - - - gtggatg