1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgattgcgccaaggaggaattgttggcttttgttaatttctcgaagaagttttccgattcttggtaaagttttagggttttcttcttttgcagGCGGGTGATGTTGCTTTCTCTGTTCCGGATTCCTTGGTTGTAACTCTGGAGAGAGTTTTGGGGAACGAGACCATTG
species | Vitis vinifera |
transcript | Vv14s0171g00310.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGAGCAACACAAGGCTATACATTATATAGCTGCGAGCGAAGATCTCCAG GCGGGTGATGTTGCTTTCTCTGTTCCGGATTCCTTGGTTGTAACTCTGGAGEST: gi|351012598|gb|FQ430162.1|FQ430162
genomic: ACGAGCAACACAAGGCTATACATTATATAGCTGCGAGCGAAGATCTCCAGgtgattgcgc ... tcttttgcagGCGGGTGATGTTGCTTTCTCTGTTCCGGATTCCTTGGTTGTAACTCTGGAG
EST: ACGAGCAACACAAGGCTATACATTATATAGCTGCGAGCGAAGATCTCCAG GCGGGTGATGTTGCTTTCTCTGTTCCGGATTCCTTGGTTGTAACTCTGGAGEST: gi|351030069|gb|FQ430811.1|FQ430811
genomic: ACGAGCAACACAAGGCTATACATTATATAGCTGCGAGCGAAGATCTCCAGgtgattgcgc ... tcttttgcagGCGGGTGATGTTGCTTTCTCTGTTCCGGATTCCTTGGTTGTAACTCTGGAG
EST: ACGAGCAACACAAGGCTATACATTATATAGCTGCGAGCGAAGATCTCCAG GCGGGTGATGTTGCTTCCTCTGTTCCGGATTCCTTGGTTGTAACTCTGGAGEST: gi|349827001|gb|FQ419092.1|FQ419092
genomic: ACGAGCAACACAAGGCTATACATTATATAGCTGCGAGCGAAGATCTCCAGgtgattgcgc ... tcttttgcagGCGGGTGATGTTGCTTTCTCTGTTCCGGATTCCTTGGTTGTAACTCTGGAG
EST: ACGAGCAACACAAGGCTATACATTATATAGCTGCGAGCGAAGATCTCCAG GCGGGTGATGTTGCTTTCTCTGTTCCGGATTCCTTGGTTGTAACTCTGGAGEST: gi|349833076|gb|FQ416454.1|FQ416454
genomic: ACGAGCAACACAAGGCTATACATTATATAGCTGCGAGCGAAGATCTCCAGgtgattgcgc ... tcttttgcagGCGGGTGATGTTGCTTTCTCTGTTCCGGATTCCTTGGTTGTAACTCTGGAG
EST: ACGAGCAACACAAGGCTATACATTATATAGCTGCGAGCGAAGATCTCCAG GCGGGTGATGTTGCTTTCTCTGTTCCGGATTCCTTGGTTGTAACTCTGGAG
genomic: ACGAGCAACACAAGGCTATACATTATATAGCTGCGAGCGAAGATCTCCAGgtgattgcgc ... tcttttgcagGCGGGTGATGTTGCTTTCTCTGTTCCGGATTCCTTGGTTGTAACTCTGGAG
tctcgaagaagttttccgattcttggtaaagttttagggttttcttcttttgcagGCGGGTGATGTTGCTTTCTCTGTTCCGGATTCCTTGGTTGTAACTCTGGAGAGAGTTTTGGGGAACGAGACCATTG
ttttcttcttttgc CT-rich tract
taaagtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattgcgccaaggaggaattgttggcttttgttaatttctcgaagaagttttccgattcttggtaaagttttagggttttcttcttttgcagGCGGGTGATGTTGCTTTCTCTGTTCCGGATTCCTTGGTTGTAACTCTGGAGAGAGTTTTGGGGAACGAGACCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA