1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gggttatttggagatcatgaaaaaattctaaagttttatttgcctaatttgatttagatgctctgtcagtaatagaatgcacccttaaatcttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAG
species | Vitis vinifera |
transcript | Vv14s0171g00250.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAG AAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGAEST: gi|77585738|gb|DV221960.1|DV221960
genomic: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgattt ... cttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
EST: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAG AAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGAEST: gi|71870914|gb|DT019969.1|DT019969
genomic: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgattt ... cttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
EST: GGATAAATA-TGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAG AAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGAEST: gi|110382064|gb|EC938387.1|EC938387
genomic: TGATAAA-AGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgattt ... cttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
EST: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAG AAAGCACTTGCTGGCNTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGAEST: gi|26257383|gb|CA808446.1|CA808446
genomic: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgattt ... cttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
EST: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAG AAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGAEST: gi|349826908|gb|FQ418999.1|FQ418999
genomic: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgattt ... cttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
EST: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAG AAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
genomic: CTGATAAAAGGGGAATAATGGCGACGAGTTCTTTTAACGGCAACATGAAGgcaatgattt ... cttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGA
aatttgatttagatgctctgtcagtaatagaatgcacccttaaatcttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAG
tcttcat CT-rich tract
taatagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggttatttggagatcatgaaaaaattctaaagttttatttgcctaatttgatttagatgctctgtcagtaatagaatgcacccttaaatcttcatgcagAAAGCACTTGCTGGCCTGAGACGAATCAATTTGGAAGGTTTGCGATGGCGAGTATTTGATGCCAAAGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - gatcatg
- - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - tgcctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccctt