1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatcctctccacttggatctcctttcttttttattaatttgcttttgggttttctggattcctgtttgtgtccctggaaaatcaagttatttcccagaaaagctaaaaaaagatcaacttgaattgtggaaacacatttttgtttatttatttatttttgatttggttgcttagGTCAATTCGAGTATGAGAATCTCCGTAAGGAGTTCAACAAGATCAACAAACAAGTTGCTAAGCTCAAAATT
species | Vitis vinifera |
transcript | Vv14s0128g00370.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTTGAGCTCGTCGACGAAGTCATCCACCTCGACAAAGAATGGCGCCAGC GTCAATTCGAGTATGAGAATCTCCGTAAGGAGTTCAACAAGATCAACAAACEST: gi|71859099|gb|DT008154.1|DT008154
genomic: CGTTGAGCTCGTCGACGAAGTCATCCACCTCGACAAAGAATGGCGCCAGCgtaatcctct ... ggttgcttagGTCAATTCGAGTATGAGAATCTCCGTAAGGAGTTCAACAAGATCAACAAAC
EST: CGTTGAGCTCGTCGACGAAGTCATCCACCTCGACAAAGAATGGCGCCAGC GTCAATTCGAGTATGAGAATCTCCGTAAGGAGTTCAACAAGATCAACAAACEST: gi|71887971|gb|DT037026.1|DT037026
genomic: CGTTGAGCTCGTCGACGAAGTCATCCACCTCGACAAAGAATGGCGCCAGCgtaatcctct ... ggttgcttagGTCAATTCGAGTATGAGAATCTCCGTAAGGAGTTCAACAAGATCAACAAAC
EST: CGTTGAGCTCGTCGACGAAGTCATCCACCTCGACAAAGAATGGCGCCAGC GTCAATTCGAGTATGAGAATCTCCGTAAGGAGTTCAACAAGATCAACAAACEST: gi|71855183|gb|DT004238.1|DT004238
genomic: CGTTGAGCTCGTCGACGAAGTCATCCACCTCGACAAAGAATGGCGCCAGCgtaatcctct ... ggttgcttagGTCAATTCGAGTATGAGAATCTCCGTAAGGAGTTCAACAAGATCAACAAAC
EST: CGTTGAGCTCGTCGACGAAGTCATCCACCTCGACAAAGAATGGCGCCAGC GTCAATTCGAGTATGAGAATCTCCGTAAGGAGTTCAACAAGATCAACAAAC
genomic: CGTTGAGCTCGTCGACGAAGTCATCCACCTCGACAAAGAATGGCGCCAGCgtaatcctct ... ggttgcttagGTCAATTCGAGTATGAGAATCTCCGTAAGGAGTTCAACAAGATCAACAAAC
tgaattgtggaaacacatttttgtttatttatttatttttgatttggttgcttagGTCAATTCGAGTATGAGAATCTCCGTAAGGAGTTCAACAAGATCAACAAACAAGTTGCTAAGCTCAAAATT
ttttgat putative branch site (score: 4)
aaacacatttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcctctccacttggatctcctttcttttttattaatttgcttttgggttttctggattcctgtttgtgtccctggaaaatcaagttatttcccagaaaagctaaaaaaagatcaacttgaattgtggaaacacatttttgtttatttatttatttttgatttggttgcttagGTCAATTCGAGTATGAGAATCTCCGTAAGGAGTTCAACAAGATCAACAAACAAGTTGCTAAGCTCAAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA