Sequence
atgc intronic sequence ATGC exonic sequence...ccttacatacactgtgtgtaccttacgcgctttttttggtgcttttaatacaattgctttacttataaaaaataaataaataaataaaaaaaaatcctagGTTAACACTAAGAAGGGGTGAAGGGGTGAAGGGGGGAATAGGGAGGAGA
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatacaattgctttacttataaaaaataaataaataaataaaaaaaaatcctagGTTAACACTAAGAAGGGGTGAAGGGGTGAAGGGGGGAATAGGGAGGAGA
ttttaat putative branch site (score: 3)
tttacttataaaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccttacatacactgtgtgtaccttacgcgctttttttggtgcttttaatacaattgctttacttataaaaaataaataaataaataaaaaaaaatcctagGTTAACACTAAGAAGGGGTGAAGGGGTGAAGGGGGGAATAGGGAGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - -catacac
- - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - tggtgct
- - - - - - - - - - - - - - - - - - - - - - - aatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa