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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttcgtttgatttatttttctttgaagtaaatgggtaatgagaaaacccaattctgaaatatgtaaatttagattattttgactccgaaagaggctgactcttatatctgttgttgcagAAGAAGGAGAAGAAAGAAAGGAAGGGGTGGTGAGGGAAGGAGTAGCATCAATAGCACTGTTGCCATGTGGGTCCCTTTCAGGCCACTTCATCCAACTTCC

Basic information

species Vitis vinifera
transcript Vv14s0108g01480.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g01480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G05910.1 (Glycine max), 3'ss of exon 1
gtcagttcgtttgatttatttttctttgaagtaaa-tgggtaatgagaaaacccaattctgaaa---tatgtaaatttagatt---attttgactccgaaagaggc-----tgactcttatatctgttgtt-----------------gcagAAGAAGG--AGAAGAAAGAAAGGAAGG-GGTGGTGAGGGAAGGAGTAGCATCAATAGCACTGTTGCCATGTGGGTCCCTTTCAGGCCACTTCATCCAACTTCC
|| ||||  ||| |||||||||| | |     |   || | |||   |      ||   |||||   | | | |||||   ||   || ||   ||  |   |  |     ||  | || | | | ||                    |||||||| ||  ||  | |||| | || |  | || ||| |||||||||||||||||||||| ||||||||||||| ||  | ||||| ||||||||||||||   
gttagtttattt-atttatttttttatccttcatcctgcgcaattgtagtgttaaaaattgaaactgtgtttcaatttgccttcccatcttttttctcacttacccatttttgttttttgtttttttttccttgggtcaaattttgaggcagAAGAGGGGAAGGTGGAAGAGATGATGATGATGATGATGGAAGGAGTAGCATCAATAGCATTGTTGCCATGTGGCTCTATCTCAGGACACTTCATCCAACT---

upper sequence: Vv14s0108g01480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G03430.1 (Glycine max), 3'ss of exon 1
gtcagttcgtttgatttatttttctttgaa--gtaaatgggtaatgagaaaacccaattctgaaatatgtaaatttagatt-------attttgactccgaaagaggctgactcttatatc---tgttgttgcagAAGAAGGAGAAGAAAGAAAGGAAGGGG---------TGGTGAGGGAAGGAGTAGCATCAATAGCACTGTTGCCATGTGGGTCCCTTTCAGGCCACTTCATCCAACTTCC
|| ||||  |||  ||| | ||  ||      |   |  |||| ||  ||||    |  ||  | | | | ||||||  ||        ||||  | |  |   |       | ||   ||   | |||  ||||| ||   || |||  | ||||  |  |         || ||| |||||||||||||||||||||| ||||||||||||| ||  | ||||| ||||||||         
gttagtttttttcttttttgttctttcatcctgcgcaatggtagtgttaaaaattgaaacttta-tgtttcaatttactttcccatcttttttctcacttacccatttatgtttttgggtcaaattttggggcagAGGAGAAAGTAGAGGGGAAGGTGGAAGAGATGATGATGATGATGGAAGGAGTAGCATCAATAGCATTGTTGCCATGTGGCTCTATCTCAGGACACTTCAT---------

upper sequence: Vv14s0108g01480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G29280.1 (Arabidopsis thaliana), 3'ss of exon 1
gtcagttcgtttgatttatttttctttgaagtaaatgggtaatgagaaaacccaattctgaaatatgtaaatttagattattttgactccgaaagaggctgactcttatatctgttgttgcagAAGAAGGAGAAGAAAGA-AAGGAAGGGGTGGTGAGGGAAGGAGTAGCATCAATAGCACTGTTGCCATGTGGGTCCCTTTCAGGCCACTTCATCCAACTTCC
    ||     |   |   |||  || |||     |   |  |     ||    ||  ||   ||    ||||    | |||     |  ||| || |         | |      | |  |||||||| ||||||||||  | ||||| |  |||| |||||||||||||||||||||  |||| ||||||||| |                           
----gtaaaagtttctggctttatttcgaaactgtttcttttttgttgaat--gatgttgttgtaaaggaattggtgtaattgcagAT--GAAGGAAG---------AGAAGGAGAGATAGAGAAGAAGAAGAAGAAAGATGAAGAAGGAGAAGTGAAGGAAGGAGTAGCATCAATAGCTTTGTTACCATGTGGGAC---------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttagattattttgactccgaaagaggctgactcttatatctgttgttgcagAAGAAGGAGAAGAAAGAAAGGAAGGGGTGGTGAGGGAAGGAGTAGCATCAATAGCACTGTTGCCATGTGGGTCCCTTTCAGGCCACTTCATCCAACTTCC
                            ggctgac  putative branch site (score: 3)
     tagattatttt  TA-rich tract