1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attaaatgcacctcttaatactacttttatattcgaatggataaatagttatttatatgtggtataccaagatctgaatataaggtttcttttaatgtagGTTTGAAAGGAAAAAAAGAGTAGATGAGAGTCAGAACTTGACTTTGGATGCTATAAGAAATTCTTTAATTCGACAAGAGGATAGCATAATATTTAGCCTC
species | Vitis vinifera |
transcript | Vv14s0108g01330.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGAACAGGGTTATCCAGTCTATTCATGTCTCTCCAACTCCTCTCAG GTTTGAAAGGNNNNNNNGAGTAGATGAGAGTCAGAACTTGACTTTGGATGCEST: gi|161715858|gb|FC065189.1|FC065189
genomic: TTGAAGAACAGGGTTATCCAGTCTATTCATGTCTCTCCAACTCCTCTCAGgttcaaacat ... tttaatgtagGTTTGAAAGGAAAAAAAGAGTAGATGAGAGTCAGAACTTGACTTTGGATGC
EST: GGTTATCCAGTCTATTCATGTCTCTCCAACTCCTCTCAG GTTTGAAAGGNNNNNNNGAGTAGATGAGAGTCAGAACTTGACTTTGGATGC
genomic: GGTTATCCAGTCTATTCATGTCTCTCCAACTCCTCTCAGgttcaaacat ... tttaatgtagGTTTGAAAGGAAAAAAAGAGTAGATGAGAGTCAGAACTTGACTTTGGATGC
tagttatttatatgtggtataccaagatctgaatataaggtttcttttaatgtagGTTTGAAAGGAAAAAAAGAGTAGATGAGAGTCAGAACTTGACTTTGGATGCTATAAGAAATTCTTTAATTCGACAAGAGGATAGCATAATATTTAGCCTC
ttttaat putative branch site (score: 3)
tttctttt CT-rich tract
tttcttttaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaaatgcacctcttaatactacttttatattcgaatggataaatagttatttatatgtggtataccaagatctgaatataaggtttcttttaatgtagGTTTGAAAGGAAAAAAAGAGTAGATGAGAGTCAGAACTTGACTTTGGATGCTATAAGAAATTCTTTAATTCGACAAGAGGATAGCATAATATTTAGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - cacctct
- - - - - - - - - - - - - - - - - - - ggataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataccaa