Sequence
atgc intronic sequence ATGC exonic sequence...gaatttggcatatttgttaagcccttctttttacatgcatcttgtttattatttattttgggggttagccactcagtgatgttgcctttggtttgagcagGTGAAAGATTAGGTCGCGGCATAGTTACTGATGCAATTACTACCCCAGTGGTCAATACTTCTGCTTACTTTTTCAAGAAAACTGCTGAGCTCATTGATTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0108g01110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G37020.3 (Glycine max), 3'ss of exon 1
gaatttggcatatttgttaagcccttctttttacatgcatcttgtttattatttattttgggggttagccactcag--tgatgttgcctttggtttgagcagGTGAAAGATTAGGTCGCGGCATAGTTACTGATGCAATTACTACCCCAGTGGTCAATACTTCTGCTTACTTTTTCAAGAAAACTGCTGAGCTCATTGATTT
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aagtttgatttaggatttagattagggtttttggtt--aatttgtatggattttaatgcagttagttttaatttggattgattttgaattcgggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGGTTAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTT
upper sequence: Vv14s0108g01110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G49660.1 (Glycine max), 3'ss of exon 1
gaatttggcatatttgttaagcccttctttttacatgcatcttgtttattat-ttattttgggggttagccactcagtgatgttgcctttggtttgagcagGTGAAAGATTAGGTCGCGGCATAGTTACTGATGCAATTACTACCCCAGTGGTCAATACTTCTGCTTACTTTTTCAAGAAAACTGCTGAGCTCATTGATTT
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-attttaattcagttagttttaatatccttggatgttattgttgatggtaatgttgtttacgaagctgattgattttgaattctgaattttggcaatgcagCTGAAAGACTGGGTAGGGGTATTGAGACTGATGGAATTACCACCCCTGTGCTGAACACTTCTGCCTACTTTTTTAAGAAAACCGCTGATCTCATTGATTT
upper sequence: Vv14s0108g01110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G01120.1 (Arabidopsis thaliana), 3'ss of exon 1
gaatttggcatatttgttaagcccttctttttacatgcatcttgttta-ttatttattttgggggttagccactcagtgatgttgcctttggtttga-gcagGTGAAAGATTAGGTCGCGGCATAGTTACTGATGCAATTACTACCCCAGTGGTCAATACTTCTGCTTACTTTTTCAAGAAAACTGCTGAGCTCATTGATTT
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-----------------------gtacctcctagatccaccagattcagtcatttcatatctgattttgttgttggagattgataaattaggttttacacagGTGAAAGATTAGGCCGTGGTATAGTGACGGATGCTATCACTACTCCTGTAGTCAACACATCTGCCTACTTCTTCAAGAAAACTGCTGAGCTTATTGACTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714535|gb|FC062985.1|FC062985EST: TGAGAAGGCCTCATTTTTGGGTTTTGATGGGACCCTTACTATTCATGCTG GTGAAAGATTAGGTCGCGGCATAGTTACTGATGCAATTACTACCCCAGTGG
genomic: TGAGAAGGCCTCATTTTTGGGTTTTGATGGGACCCTTACTATTCATGCTGgtatatatat ... gtttgagcagGTGAAAGATTAGGTCGCGGCATAGTTACTGATGCAATTACTACCCCAGTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttattatttattttgggggttagccactcagtgatgttgcctttggtttgagcagGTGAAAGATTAGGTCGCGGCATAGTTACTGATGCAATTACTACCCCAGTGGTCAATACTTCTGCTTACTTTTTCAAGAAAACTGCTGAGCTCATTGATTT
atttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaatttggcatatttgttaagcccttctttttacatgcatcttgtttattatttattttgggggttagccactcagtgatgttgcctttggtttgagcagGTGAAAGATTAGGTCGCGGCATAGTTACTGATGCAATTACTACCCCAGTGGTCAATACTTCTGCTTACTTTTTCAAGAAAACTGCTGAGCTCATTGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - -cccttct
- - - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccttt