1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgcatatcccactctcctctcatcatctacctacagcccaagattcttgcataactccttgctactccctagagcttcaaagctattcttttctctcagGAAAATGAAGGCTGGTGCCCTTGAGCTTGGTGAGGGGTCCAAGACTTCCATCCCTAGAGGTGGGGTGAACAGAGGGATCTCTATACTCGACTTCATTCTG
species | Vitis vinifera |
transcript | Vv14s0108g01050.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tcttgcataactccttgctactccctagagcttcaaagctattcttttctctcagGAAAATGAAGGCTGGTGCCCTTGAGCTTGGTGAGGGGTCCAAGACTTCCATCCCTAGAGGTGGGGTGAACAGAGGGATCTCTATACTCGACTTCATTCTG
gcataac putative branch site (score: 3)
ctattcttttctctc putative PPT
tattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcatatcccactctcctctcatcatctacctacagcccaagattcttgcataactccttgctactccctagagcttcaaagctattcttttctctcagGAAAATGAAGGCTGGTGCCCTTGAGCTTGGTGAGGGGTCCAAGACTTCCATCCCTAGAGGTGGGGTGAACAGAGGGATCTCTATACTCGACTTCATTCTG
- -catatcc
- - - - - - ctctcct
- - - - - - - - - - -catcatc
- - - - - - - - - - - - - - -acctaca
- - - - - - - - - - - - - - - - - - -cccaaga
- - - - - - - - - - - - - - - - - - - - - - - cttgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaagct