1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtctgttcattttggcttcttcactttctgttattctgtttgtttggggtttttaagattttctcaacaactttcttttcttttccagGGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG
species | Vitis vinifera |
transcript | Vv14s0108g00270.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATG GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAGCTAAGGAGTACAAGEST: gi|161709120|gb|FC058392.1|FC058392
genomic: CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATGgtctgttcat ... tcttttccagGGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG
EST: CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATG GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAGEST: gi|110693694|gb|EE070148.1|EE070148
genomic: CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATGgtctgttcat ... tcttttccagGGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG
EST: CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATG GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAGEST: gi|161709859|gb|FC058919.1|FC058919
genomic: CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATGgtctgttcat ... tcttttccagGGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG
EST: CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATG GGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAT
genomic: CACCAAGTGGGGTGCAGCCATTGTTTCAGTTGTTCTTCCTGACAAAAATGgtctgttcat ... tcttttccagGGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG
ttctgtttgtttggggtttttaagattttctcaacaactttcttttcttttccagGGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG
ttttctcaacaacttt CT-rich tract
tttttaagattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgttcattttggcttcttcactttctgttattctgtttgtttggggtttttaagattttctcaacaactttcttttcttttccagGGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG