Sequence
atgc intronic sequence ATGC exonic sequence...tttaattgattacatattttttttggagctatgatttgttggaatcaattaaaacctagagtgtggattgcagtgatatatatccatacttgtactgcagGCATAAGCAGGTGATGTTGGAGGCATATGATCAACAGTGTGATGAAGCAGCAAAAATATTTTCAGAATATCACAAACGTTTGCAATATTATGTTAATCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0083g00990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G50960.1 (Glycine max), 3'ss of exon 1
--tttaattgattacatattttttt---tggagctatgatttgttggaatcaattaaaacctagagtgtggattgcagtgatatatatccatacttgtactgcagGCATAAGCAGGTGATGTTGGAGGCATATGATCAACAGTGTGATGAAGCAGCAAAAATATTTTCAGAATATCACAAACGTTTGCAATATTATGTTAATCAA
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ttattatctcattttatgtgcttttgtctctaccaataatttgtttgagagaggggaaaagaaatgatgtgtttatattagt-----tctttacccattttgcagGCATAAGCAAGTGATGTTGGAGGCCTATGATCGACAATGTGATGAGGCTGCAAAAATATTTGCTGAATATCATAAACGTCTCTGTTACTATGTAAATCAA
upper sequence: Vv14s0083g00990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G27740.1 (Glycine max), 3'ss of exon 1
-tttaattgattacatattttttttggagctatgatttgttggaatcaattaaaacctagagtgtggattgcagtgatatatatccatacttgtactgcagGCATAAGCAGGTGATGTTGGAGGCATATGATCAACAGTGTGATGAAGCAGCAAAAATATTTTCAGAATATCACAAACGTTTGCAATATTATGTTAATCAA
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atatcattttatgtgcttttgtctctgtaccaccaataatttgtttgaaagagaggagaaaagaaatgatg-agtttttgagttctttacccattgtgcagGCATAAGCAAGTGATGTTGGAGGCCTATGATCGACAATGTGATGAGGCTGCAAAAATATTTGCTGAATATCATAAATGTCTCTGTTACTATGTAAATCAA
upper sequence: Vv14s0083g00990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G38880.1 (Arabidopsis thaliana), 3'ss of exon 1
tttaattgattacatattttttttggagctatg-atttgttggaatcaattaaaacctagagtgtggattgc--agtgatatatatccatacttgtactgcagGCATAAGCAGGTGATGTTGGAGGCATATGATCAACAGTGTGATGAAGCAGCAAAAATATTTTCAGAATATCACAAACGTTTGCAATATTATGTTAATCAA
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-tgcattgattctgttcatacaacaaatcaaaatatttgttgtagttatgttcagtagatctttcaaattgtttagtgagttttatttttcctttt--ttcagACACAAGCAAGCATTGTTGGAAGCGTATGATCAACAATGTGATGAAGCAACAAGAATATTTGCAGAGTATCACAAAAGGCTACAAGTCTATGTTAATCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254917299|gb|GR906125.1|GR906125EST: GGGAGGAGGCAGACAGGAAGCGGATGCTTGATGAGCGGTCCAATTACAG GCATAAGCAGGTGATGTTGGAGGCATATGATCAACAGTGTGATGAAGCAGC
genomic: GGGAGGAGGCAGAGAGGAAGCGGATGCTTGATGAGCGGTCCAATTACAGgtttgattct ... tgtactgcagGCATAAGCAGGTGATGTTGGAGGCATATGATCAACAGTGTGATGAAGCAGC
EST:
gi|254915548|gb|GR904979.1|GR904979EST: GGGAGGAGGCAGACAGGAAGCGGATGCTTGATGAGCGGTCCAATTACAG GCATAAGCAGGTGATGTTGGAGGCATATGATCAACAGTGTGATGAAGCAGC
genomic: GGGAGGAGGCAGAGAGGAAGCGGATGCTTGATGAGCGGTCCAATTACAGgtttgattct ... tgtactgcagGCATAAGCAGGTGATGTTGGAGGCATATGATCAACAGTGTGATGAAGCAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caattaaaacctagagtgtggattgcagtgatatatatccatacttgtactgcagGCATAAGCAGGTGATGTTGGAGGCATATGATCAACAGTGTGATGAAGCAGCAAAAATATTTTCAGAATATCACAAACGTTTGCAATATTATGTTAATCAA
tgatatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttaattgattacatattttttttggagctatgatttgttggaatcaattaaaacctagagtgtggattgcagtgatatatatccatacttgtactgcagGCATAAGCAGGTGATGTTGGAGGCATATGATCAACAGTGTGATGAAGCAGCAAAAATATTTTCAGAATATCACAAACGTTTGCAATATTATGTTAATCAA
- - - - - - - - - - - -tggagct
- - - - - - - - - - - - - - - - - - - - -gaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatact