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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaaattgatatgtacatcagccaaacaactaaaacataatttataacatctctgtagttctttcttctctctttttcctttccaattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGCTAGAGAGTGTTGTAGTAGCAAAGATGGGAGATTTAGACAGTCTCTGTGA

Basic information

species Vitis vinifera
transcript Vv14s0083g00320.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720585|gb|EE096646.1|EE096646
EST:     GGAGCTTTTGGCTGGTGGGTACCTGGTTCGAGTCACCATTCAAAAAGAAG                         TGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
genomic: GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAGgtactaaatt ... caattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
EST: gi|110718836|gb|EE096125.1|EE096125
EST:     GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAG                         TGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
genomic: GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAGgtactaaatt ... caattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
EST: gi|110711942|gb|EE088999.1|EE088999
EST:     GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAG                         TGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
genomic: GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAGgtactaaatt ... caattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
EST: gi|110711381|gb|EE087792.1|EE087792
EST:     GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAG                         TGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
genomic: GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAGgtactaaatt ... caattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
EST: gi|110710841|gb|EE087354.1|EE087354
EST:     GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAG                         TGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
genomic: GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAGgtactaaatt ... caattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
EST: gi|110730041|gb|EE106669.1|EE106669
EST:     GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAG                         TGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
genomic: GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAGgtactaaatt ... caattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
EST: gi|110729823|gb|EE106203.1|EE106203
EST:     GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAG                         TGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
genomic: GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAGgtactaaatt ... caattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
EST: gi|37184998|gb|CF604351.1|CF604351
EST:     GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAG                         TGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
genomic: GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAGgtactaaatt ... caattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
EST: gi|161717840|gb|FC066608.1|FC066608
EST:     GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAG                         TGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
genomic: GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAGgtactaaatt ... caattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
EST: gi|294963758|gb|GW836608.1|GW836608
EST:     GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAG                         TGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
genomic: GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAGgtactaaatt ... caattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
EST: gi|161718910|gb|FC068628.1|FC068628
EST:     GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAG                         TGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC
genomic: GGAGCTTTTGGCTGGTGGTTACCTGGTTCGAGTCACCATTCAAAAAGAAGgtactaaatt ... caattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttataacatctctgtagttctttcttctctctttttcctttccaattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGCTAGAGAGTGTTGTAGTAGCAAAGATGGGAGATTTAGACAGTCTCTGTGA
   ttataac  putative branch site (score: 2)
           tctctgtagttctttc  CT-rich tract
     ataacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactaaattgatatgtacatcagccaaacaactaaaacataatttataacatctctgtagttctttcttctctctttttcctttccaattagcagTGGATTTTGGGGTCATGAACGAGCTGCTTCGGGATGAAGAGATGAATCAGCTAGAGAGTGTTGTAGTAGCAAAGATGGGAGATTTAGACAGTCTCTGTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT