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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaaattgcctcttctcatttgccacaataaataaatataatgctgagacatacagattattggtgggtaaattgggagAGGACACTAACTCG

Basic information

species Vitis vinifera
transcript Vv14s0081g00320.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0081g00320.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G43560.1 (Glycine max), 3'ss of exon 1
gtgaaaattgcctcttctcatttgccacaataaataaatataatgctgagacatacagattattggtgggtaaattgggagAGGACACT--AACTCG------------------------------------
       |||||||||||| ||||| || || || ||||  |||||||| || ||||| ||||||||||||||||| || ||||   ||   ||  |                                    
------gttgcctcttctcttttgctaccatcaacaaatccaatgctgaaacttacaggttattggtgggtaaattagGGGAGGGATCTGTGACCAGATTCGATCAGGATCCATTACTTGGTGAAAATTCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaataaataaatataatgctgagacatacagattattggtgggtaaattgggagAGGACACTAACTCG
     aaataaatataatgct  TA-rich tract