1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccattattaactctaccattgtatatgtcttctagcctcattttaatttaatttttttaatattggcttgcaatttatttatttatttttttttgtgtagTATCTTGATGAAAACAAGTCATTGATTCTGAAGATTGTTGAGAGCCAGAATTCAGGAAAATTGACTGAATGTGCAGA
species | Vitis vinifera |
transcript | Vv14s0081g00200.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGATGGCAGCCTATTACCCCAGCAACGTCACCACTGATCACATTCAGCAG TATCTTGATGAAAACAAGTCATTGATTCTGAAGATTGTTGAGAGCCAGAATEST: gi|110733165|gb|EE109120.1|EE109120
genomic: TGATGGCAGCCTATTACCCCAGCAACGTCACCACTGATCACATTCAGCAGgttcctcttc ... ttttgtgtagTATCTTGATGAAAACAAGTCATTGATTCTGAAGATTGTTGAGAGCCAGAAT
EST: TGATGGCAGCCTATTACCCCAGCAACGTCACCACTGATCACATTCAGCAG TATCTTGATGAAAACAAGTCATTGATTCTGAAGATTGTTGAGAGCCAGAATEST: gi|77581760|gb|DV219834.1|DV219834
genomic: TGATGGCAGCCTATTACCCCAGCAACGTCACCACTGATCACATTCAGCAGgttcctcttc ... ttttgtgtagTATCTTGATGAAAACAAGTCATTGATTCTGAAGATTGTTGAGAGCCAGAAT
EST: TGATGGCAGCCTATTACCCCAGCAACGTCACCACTGATCACATTCAGCAG TATCTTGATGAAAACAAGTCATTGATTCTGAAGATTGTTGAGAGCCAGAAT
genomic: TGATGGCAGCCTATTACCCCAGCAACGTCACCACTGATCACATTCAGCAGgttcctcttc ... ttttgtgtagTATCTTGATGAAAACAAGTCATTGATTCTGAAGATTGTTGAGAGCCAGAAT
atttaatttttttaatattggcttgcaatttatttatttatttttttttgtgtagTATCTTGATGAAAACAAGTCATTGATTCTGAAGATTGTTGAGAGCCAGAATTCAGGAAAATTGACTGAATGTGCAGA
ttttaat putative branch site (score: 3)
tttatttatttatttt putative PPT
atttttttaatattgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccattattaactctaccattgtatatgtcttctagcctcattttaatttaatttttttaatattggcttgcaatttatttatttatttttttttgtgtagTATCTTGATGAAAACAAGTCATTGATTCTGAAGATTGTTGAGAGCCAGAATTCAGGAAAATTGACTGAATGTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - ctctacc
- - - - - - - - - - - - -tgtcttc
- - - - - - - - - - - - - - - - -agcctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgca