Sequence
atgc intronic sequence ATGC exonic sequence...agtgaagggcataaagttacgagtcctttatctcctgaaagtgttattgacttgttcaatatgtagttttttatgcattgaattttcaactccaaaccagTTTGCAGGAAATGCATATATGAGAAGCTCTCAGATGAAGAGGTAGATTGCTGTCCTGTATGCAATATTGATTTGGGCTGTGTTCCTGTGGATAAACTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0081g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G30510.1 (Glycine max), 3'ss of exon 1
agtgaagggcataaagttacgag-tcctttatctcctgaaagtgtt-attgacttgttcaat-atgtagttttttatgcattgaattttcaactccaaaccagTTTGCAGGAAATGCATATATGAGAAGCTCTCAGATGAAGAGGTAGATTGCTGTCCTGTATGCAATATTGATTTGGGCTGTGTTCCTGTGGATAAACTCAG
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---cacacacttgcaccttctagcttgctcatgttttgagttcatttgttgacactttcaaggatcttctgtgcaatgcactgaactatgaaccctacaccagTTTGCAGGAAATGCATATATGAGAAACTCTCGGATGAGGAGACGGATTGCTGTCCTGTGTGCAATATTGACTTAGGCTGCCTTCCGGTGGAGAAACTCAG
upper sequence: Vv14s0081g00070.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G36830.1 (Glycine max), 3'ss of exon 1
agtgaagggcataaagttacgagtcctttatctcctgaaagtgttattgacttgttcaat-atgtagttttttatgcattgaattttcaactccaaaccagTTTGCAGGAAATGCATATATGAGAAGCTCTCAGATGAAGAGGTAGATTGCTGTCCTGTATGCAATATTGATTTGGGCTGTGTTCCTGTGGATAAACTCAG
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acgcacttgcaccttattgcttgcacatgtttttgagatcat-ttgttgacactttcaaggatcttctgtgcaatgcactgaactgtgaaccttacaccagTTTGCAGGAAGTGCATATATGAGAAACTCTCGGATGAGGAGATGGATTGCTGTCCTGTGTGCCATATTGACTTAGGCTGCCTTCCGGTGGAGAAACTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgacttgttcaatatgtagttttttatgcattgaattttcaactccaaaccagTTTGCAGGAAATGCATATATGAGAAGCTCTCAGATGAAGAGGTAGATTGCTGTCCTGTATGCAATATTGATTTGGGCTGTGTTCCTGTGGATAAACTCAG
tattgac putative branch site (score: 2)
aatatgtagtttttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtgaagggcataaagttacgagtcctttatctcctgaaagtgttattgacttgttcaatatgtagttttttatgcattgaattttcaactccaaaccagTTTGCAGGAAATGCATATATGAGAAGCTCTCAGATGAAGAGGTAGATTGCTGTCCTGTATGCAATATTGATTTGGGCTGTGTTCCTGTGGATAAACTCAG
- - - - -cataaag
- - - - - - - - - - - - - - - -ctcctga
- - - - - - - - - - - - - - - - - - - - - - - -tgacttg