1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaaaaaagaagaagaactgttctttgacttaatgctcgtcttaatatgctttttctttcctttttttggatctaaaacccaataatgatcaatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTGACAGTGCAAAAGAACAGCAGTGAGGAGGAGAAGGCTAGCAGCAGTGCA
species | Vitis vinifera |
transcript | Vv14s0081g00010.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110357044|gb|EC920312.1|EC920312
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110382415|gb|EC939426.1|EC939426
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGATCCGGCAAAACCACCGGCCAA GGCGCAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|161719306|gb|FC068270.1|FC068270
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110421032|gb|EC987319.1|EC987319
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110359936|gb|EC922298.1|EC922298
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: ACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110395704|gb|EC961374.1|EC961374
genomic: ACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGATCCGGCAAAACCACCGGCCAA GGCGCAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110389158|gb|EC953976.1|EC953976
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGATCCGGCAAAACCACCGGCCAA GGCGCAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110359422|gb|EC920879.1|EC920879
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110685024|gb|EE062971.1|EE062971
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|71868931|gb|DT017986.1|DT017986
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGATCCGGCAAAACCACCGGCCAA GGCGCAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|18458150|gb|BM436428.1|BM436428
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|71887288|gb|DT036343.1|DT036343
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGATCCGGCAAAACCACCGGCCAA GGCGCAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110360880|gb|EC924322.1|EC924322
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGATCCGGCAAAACCACCGGCCAA GGCGCAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|71865802|gb|DT014857.1|DT014857
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGATCCGGCAAAACCACCGGCCAA GGCGCAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110703564|gb|EE080519.1|EE080519
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110726327|gb|EE102012.1|EE102012
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110357840|gb|EC921623.1|EC921623
genomic: GCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|71872334|gb|DT021389.1|DT021389
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGATCCGGCAAAACCACCGGCCAA GGCGCAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|71863191|gb|DT012246.1|DT012246
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110424930|gb|EC991305.1|EC991305
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110710653|gb|EE086986.1|EE086986
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|161710177|gb|FC061075.1|FC061075
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110691259|gb|EE069153.1|EE069153
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|71863080|gb|DT012135.1|DT012135
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|37190249|gb|CF609598.1|CF609598
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110709078|gb|EE084223.1|EE084223
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110359559|gb|EC921247.1|EC921247
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|71874129|gb|DT023184.1|DT023184
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110357411|gb|EC920932.1|EC920932
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|77579377|gb|DV218517.1|DV218517
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110685504|gb|EE062284.1|EE062284
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|30136793|gb|CB922131.1|CB922131
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|110686317|gb|EE063813.1|EE063813
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|71876825|gb|DT025880.1|DT025880
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGATCCGGCAAAACCACCGGCCAA GGCGCAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|71870573|gb|DT019628.1|DT019628
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTEST: gi|18459647|gb|BM437925.1|BM437925
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
EST: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCGGCCAA GGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
genomic: GAGAAGAGTGCTCTTCCTCCATCCAACGACCCGGCAAAACCACCAGCCAAgtaagttctg ... aatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTT
atgctttttctttcctttttttggatctaaaacccaataatgatcaatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTGACAGTGCAAAAGAACAGCAGTGAGGAGGAGAAGGCTAGCAGCAGTGCA
atctaaa putative branch site (score: 3)
tttttc putative PPT
aataatgatcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaaagaagaagaactgttctttgacttaatgctcgtcttaatatgctttttctttcctttttttggatctaaaacccaataatgatcaatttttcagGGCACAAGTGGTGGGTTGGCCTCCGGTGAGATCGTTCCGAAAGAACATCTTGACAGTGCAAAAGAACAGCAGTGAGGAGGAGAAGGCTAGCAGCAGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
aaaaaaa
- - - - - gaagaac
- - - - - - - - - - - - - - - aatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccca