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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattgaattccgtctttaagtattatttttacgttttattttttattttttggtcttttcgttttcggaagagcatttttgaatcacatcaaaagatagattagtgattatcacaatttatgttgcttttttcttttaagtaaattggatttgcaactctcagtttttgtttgttccatacagAATACGCTGATTTTGAGGGCGATTCCAGGATTAAACGAAATCGGAAAGGCTCTATTAG

Basic information

species Vitis vinifera
transcript Vv14s0068g02070.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352778060|gb|FQ467113.1|FQ467113
EST:     TTTTTCGCGATCTCGATGCCGATGATTTCAGACACCCTCTCGATAAGCAG                         AATACGCTGATTTTGAGGGCGATTCCAGGATTAAACGAAATCGGAAAGGCT
genomic: TTTTTCGCGATCTCGATGCCGATGATTTCAGACACCCTCTCGATAAGCAGgtgattgaat ... ttccatacagAATACGCTGATTTTGAGGGCGATTCCAGGATTAAACGAAATCGGAAAGGCT
EST: gi|26262462|gb|CA813525.1|CA813525
EST:     TTTTTCGCGATCTCGATGCCGATGATTTCAGACACCCTCTCGATAAGCAG                         AATACGCTGATTTTGAGGGCGATTCCAGGATTAAACGAA-TCGGAAAGGCT
genomic: TTTTTCGCGATCTCGATGCCGATGATTTCAGACACCCTCTCGATAAGCAGgtgattgaat ... ttccatacagAATACGCTGATTTTGAGGGCGATTCCAGGATTAAACGAAATCGGAAAGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttttaagtaaattggatttgcaactctcagtttttgtttgttccatacagAATACGCTGATTTTGAGGGCGATTCCAGGATTAAACGAAATCGGAAAGGCTCTATTAG
                                   tttttgtttgttcc  CT-rich tract
     ttttaagtaaatt  TA-rich tract