1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tattggcattgctttaagatactgcttaatttgatgagctaatggtctcttttgtgtctatactcattcagttctccttttgcaattaaattttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGAATAGCTTTTGGCAATTGGGCGATGAACTCCGAGGACAATCAAAGGTCT
species | Vitis vinifera |
transcript | Vv14s0068g02040.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|352795214|gb|FQ477324.1|FQ477324
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|71855076|gb|DT004131.1|DT004131
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|110702016|gb|EE080244.1|EE080244
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|161717659|gb|FC066914.1|FC066914
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|111125117|gb|EE253735.1|EE253735
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|161714832|gb|FC063280.1|FC063280
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|161719902|gb|FC066124.1|FC066124
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|110396191|gb|EC961872.1|EC961872
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|161713011|gb|FC062433.1|FC062433
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|110709022|gb|EE084118.1|EE084118
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|352789607|gb|FQ476205.1|FQ476205
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|351029823|gb|FQ427663.1|FQ427663
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|110384179|gb|EC948598.1|EC948598
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|110687785|gb|EE065593.1|EE065593
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|294967232|gb|GW840107.1|GW840107
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|110728646|gb|EE104397.1|EE104397
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|352785551|gb|FQ475554.1|FQ475554
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|161721523|gb|FC069739.1|FC069739
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: GAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|26257057|gb|CA808120.1|CA808120
genomic: GAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTTTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|110723367|gb|EE100597.1|EE100597
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|351019333|gb|FQ429493.1|FQ429493
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|110688436|gb|EE066988.1|EE066988
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGEST: gi|71857981|gb|DT007036.1|DT007036
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
EST: TTCACAGGCGAAGAAGATAAAG GATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
genomic: TTCACAGGCGAAGAAGATAAAGgtgagttctt ... ttttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATG
tctcttttgtgtctatactcattcagttctccttttgcaattaaattttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGAATAGCTTTTGGCAATTGGGCGATGAACTCCGAGGACAATCAAAGGTCT
ttttgcaattaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattggcattgctttaagatactgcttaatttgatgagctaatggtctcttttgtgtctatactcattcagttctccttttgcaattaaattttgtacagGATCTGTTGTTGGTCTGTGATTTCATTAGGCTTTGCAAGATGGAGAGCATGAATAGCTTTTGGCAATTGGGCGATGAACTCCGAGGACAATCAAAGGTCT
- - - cattgct
- - - - - - - - - -tactgct
- - - - - - - - - - - - - - - - - - -gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattaaa