Sequence
atgc intronic sequence ATGC exonic sequence...tctaagggattttgacatatgatttttgagagggaaacctgtgctgtatcaaaaaatacttgtgagagtcacatgctcacatgtttgatttctgtttcagGTGCTTCTAGAGTCCGCGACCTTCCTCCAGTGCATTTCTGTAGTCATGGTTTTGTGCTGGGGAAGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G015854_T01 (Zea mays), 3'ss of exon 1
tctaagg-gattttgacatatgattt---ttgagagggaaacctgtgctgtatcaaaaaatacttgtgagagtcacatgctcacatgtttgatttctgtttcagGTGCTTCTAGAGTCCGCGACCTTCCTCCAGTGCATTTCTGTAGTCATGGTTTTGTGCTGGGGAAGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAA
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cataagtcaactgtgatgtatccaatagatttgcatggagaattgcactttgt----agttatgcacaggagcccaacgtttacatcttcaattaacttgccagGAGCAGAAAGAGTGAGAATGCTTCCTGCCCATGAATTCTGCAAACAAGGATTTGTGTTGGGGAAAGCATCTGAAGCTGGATTTGGCAATGAAATGTACAA
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G26160.1 (Glycine max), 3'ss of exon 1
tctaagggattttgacatatgatttttgagagggaaa--cctgtgctgtatcaaaaaatacttgtgagagtcacatgctcacatgtttgatttctgtttcagGTGCTTCTAGAGTCCGCGACCTTCCTCCAGTGCATTTCTGTAGTCATGGTTTTGTGCTGGGGAAGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAA
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aattagatatctgaaactatgatatatatagatacactccctgtgcttctggggagaatagt-gtcagattagaacatgactttgtttgattt-tgttttagGTGCTTCAAGAGTCAGGGATTTTCCCCCAGAGCAATTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAATGTACAA
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G26160.2 (Glycine max), 3'ss of exon 1
tctaagggattttgacatatgatttttgagagggaaa--cctgtgctgtatcaaaaaatacttgtgagagtcacatgctcacatgtttgatttctgtttcagGTGCTTCTAGAGTCCGCGACCTTCCTCCAGTGCATTTCTGTAGTCATGGTTTTGTGCTGGGGAAGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAA
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aattagatatctgaaactatgatatatatagatacactccctgtgcttctggggagaatagt-gtcagattagaacatgactttgtttgattt-tgttttagGTGCTTCAAGAGTCAGGGATTTTCCCCCAGAGCAATTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAAT------
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G07210.1 (Glycine max), 3'ss of exon 1
tctaagggattttgacatatgatttttgagagggaaacct---gtgctgtatcaaaaaatacttgtgagagtcacatgctcacatgtttgatttctgtttcagGTGCTTCTAGAGTCCGCGACCTTCCTCCAGTGCATTTCTGTAGTCATGGTTTTGTGCTGGGGAAGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAA
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---gatatatatatatatatatatatacacacacacactcctcgtgcttctgtggagaacagtgttatagattagaagatgacttttttcttttttgtttcagGTGCTTCAAGAGTCAGGGATTTGCCCCCGGAGCAGTTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAATGTACAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718549|gb|FC069308.1|FC069308EST: GGAGAACCTCAGAGTCAGAAGGATGATTCAAGATCACTTTGCTTTGCATG GTGCTTCTAGAGTCCGCGACCTTCCTCCAGTGCATTTCTGTAGTCATGGTT
genomic: GGAGAACCTCAGAGTCAGAAGGATGATTCAAGATCACTTTGCTTTGCATGgtatatgtgt ... tctgtttcagGTGCTTCTAGAGTCCGCGACCTTCCTCCAGTGCATTTCTGTAGTCATGGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatcaaaaaatacttgtgagagtcacatgctcacatgtttgatttctgtttcagGTGCTTCTAGAGTCCGCGACCTTCCTCCAGTGCATTTCTGTAGTCATGGTTTTGTGCTGGGGAAGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAA
tttctgtttc CT-rich tract
aaaaaatactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctaagggattttgacatatgatttttgagagggaaacctgtgctgtatcaaaaaatacttgtgagagtcacatgctcacatgtttgatttctgtttcagGTGCTTCTAGAGTCCGCGACCTTCCTCCAGTGCATTTCTGTAGTCATGGTTTTGTGCTGGGGAAGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - agggaaa
- - - - - - - - - - - - - - - - - - - - -tgctgta
- - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatgc