Sequence
atgc intronic sequence ATGC exonic sequence...agtggatcaacagaaaaactgagcgctggaagtttcttatttcgctttttcaatctgtatattgcttagaacccatgtttaatatttttgaaatttgcagGAATTGATGGTGTTGGACTTGGACTTATTTTGCATCATCAAAGGCTTGGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G27200.1 (Glycine max), 3'ss of exon 1
agtggatcaacagaaaaactgagcg--ctggaagtttcttatttcgctttttcaatctgtatattgcttagaacc-catgtttaatat---ttttgaaatttgcagGAATTGATGGTGTTGGACTTGGACTTATTTTGCATCATCAAAGGCTTGGAAA
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------cctatatatacaatgagaagcttatctattattcatgtcatgattacaaacaaggttactcataaatttgtgtgaataacttgtactccaaattttgcagGGATTGATGGCGTGGGACTTGGACTTATTTTACATCATCAGAAACTGGGGAG
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G05580.2 (Glycine max), 3'ss of exon 1
agtggatcaacagaaaaactgagcgctggaagtttcttatttcgctttttcaatctgtata---ttgctta-gaacccatgtttaatattt----ttgaaatttgcagGAATTGATGGTGTTGGACTTGGACTTATTTTGCATCATCAAAGGCTTGGAAA
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--------ttttttaaaactattaggtaaaccttatatcttccattaatccattccaaacaaggttgctcataaatttgtgaaaataacttgcattcaaatttcacagGGATTGATGGCGTGGGACTTGGACTTATTTTACATCATCAGAAACTGGGAAG
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G05570.1 (Glycine max), 3'ss of exon 1
agtggatcaacagaaaaactgagcgctggaagtttcttatttcgctttttcaatctgtatattgcttagaacc-catgtttaatat---ttttgaaatttgcagGAATTGATGGTGTTGGACTTGGACTTATTTTGCATCATCAAAGGCTTGGAAA
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cctatatatacagtgaga---agcttttcta-ttattcatgtcatgattacaaacaaggttactcataaatttgtgtgaataacttgcacttcaaattttacagGGATTGATGGCGTGGGACTTGGACTTATTTTACATCATCAGAAACTGGGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttcaatctgtatattgcttagaacccatgtttaatatttttgaaatttgcagGAATTGATGGTGTTGGACTTGGACTTATTTTGCATCATCAAAGGCTTGGAAA
gtttaat putative branch site (score: 4)
atgtttaatatttttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtggatcaacagaaaaactgagcgctggaagtttcttatttcgctttttcaatctgtatattgcttagaacccatgtttaatatttttgaaatttgcagGAATTGATGGTGTTGGACTTGGACTTATTTTGCATCATCAAAGGCTTGGAAA
- - - - - -agaaaaa
- - - - - - - - - - - gcgctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccatgt