1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tacaatcaatttcatctacttgggtaattttaaaattttctcatgtttgcttatatagaattttcatgcattcttggttttctcttgttaaaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTTAATATTGTCAGTGGCAACACTTCAACATCATGGGAAAGGCTTGATGC
species | Vitis vinifera |
transcript | Vv14s0068g01370.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGGTCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110407404|gb|EC973004.1|EC973004
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|87585747|gb|DY474339.1|DY474339
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110382813|gb|EC947134.1|EC947134
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGTGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110376298|gb|EC941352.1|EC941352
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: CTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|161708591|gb|FC061300.1|FC061300
genomic: CTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110371863|gb|EC935989.1|EC935989
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110373566|gb|EC937815.1|EC937815
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGTGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|71879754|gb|DT028809.1|DT028809
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGTGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|33405737|gb|CF211364.1|CF211364
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|351030153|gb|FQ432091.1|FQ432091
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATTAAGGATTCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110388232|gb|EC952964.1|EC952964
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGTGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110687596|gb|EE065188.1|EE065188
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGTGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|32246370|gb|CD712189.1|CD712189
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110411139|gb|EC976842.1|EC976842
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110405506|gb|EC971047.1|EC971047
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110380319|gb|EC945574.1|EC945574
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110419233|gb|EC985445.1|EC985445
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110405188|gb|EC970724.1|EC970724
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|161720207|gb|FC070859.1|FC070859
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|30130026|gb|CB915365.1|CB915365
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|349826447|gb|FQ418538.1|FQ418538
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACCATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110363176|gb|EC926748.1|EC926748
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110411243|gb|EC976950.1|EC976950
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110384356|gb|EC948786.1|EC948786
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110418411|gb|EC984564.1|EC984564
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|37189753|gb|CF609102.1|CF609102
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|351047206|gb|FQ454817.1|FQ454817
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|71859044|gb|DT008099.1|DT008099
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGTGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110411649|gb|EC977370.1|EC977370
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110379929|gb|EC945156.1|EC945156
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110687156|gb|EE064330.1|EE064330
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: CGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110415005|gb|EC980873.1|EC980873
genomic: CGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|27586271|gb|CB008966.1|CB008966
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110378436|gb|EC943568.1|EC943568
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGTGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110688620|gb|EE067380.1|EE067380
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGTGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|33407407|gb|CF213034.1|CF213034
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: CCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTG-GATTTGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATEST: gi|110695647|gb|EE073904.1|EE073904
genomic: CCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCG-TATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTAT
EST: GGTGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTEST: gi|110390154|gb|EC955048.1|EC955048
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
EST: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCAC GACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
genomic: GGCGCCGAGCGAGTCTCCGTGTCCATCGACATCTACAATCAAGGATCCACgtacgttttc ... aaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATT
tttgcttatatagaattttcatgcattcttggttttctcttgttaaaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTTAATATTGTCAGTGGCAACACTTCAACATCATGGGAAAGGCTTGATGC
ttatatagaattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaatcaatttcatctacttgggtaattttaaaattttctcatgtttgcttatatagaattttcatgcattcttggttttctcttgttaaaatttgtagGACTGCGTATGATGTAAGTCTCACTGATGATAGCTGGTCTCAAGATGTATTTAATATTGTCAGTGGCAACACTTCAACATCATGGGAAAGGCTTGATGC
- caatcaa
- - - - - - - - tacttgg
- - - - - - - - - - - - - - - - - - - -ctcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca